RNA id: XM_036972303.1


Basic Information

Item Value
RNA id XM_036972303.1
length 3170
RNA type mRNA
GC content 0.56
exon number 21
gene id LOC110511701
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 446215 ~ 512472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGATACCCATGATACATTGCGGTCTTTGACCCCTGTATCCGACGTACACGGTCGAGAGGACTTCCGCTTCTCTCCGACCGCTTGTTGTTTTGAGGcgtgaaagagagaaaaggagcatTTCAACTACACAGTTAACTACGATTTAACACAATGGCTGTAGAGGGTTGTGGGTTGTGAGCAGCAGTGAGTGGCCTCTACACCAGCACCTCCAGAGCACCAGCAGCAGTCTGCCACCCATCCAGACAtctcaacccctccctccctcagccagACCCCCCCAGCGGGGTGACAACCCACCAGCATGGAGGCCTCCTTCGGCCCCACCTTCTCAGCTGTGGTTCCTGGAGCTAAAAcgGAAGCCTCCGGTACCTACAAGCAGCACCGCcgtaccccctcctcctccagtaccctcaCATACTCGCCACGAGACGACGAGGATggcatgCTCCCCATCAGCACCCCGAGGCGTTCTGACTCTGCCATCTCGGTGCGTTCCCTCCTCTCTGAGTCCAACATGTCCCTCCGCTCGACCTTCTCTCTTCACGAGGACGACGACGACACGGAGCCCCTGGTGTTTGCAGAGCAGCCGTCGGTGAAGCTGTGTTGTCAGCTCTGCTGCAGCGTCTTCAAAGACCCTGTCATCACCACCTGTGGGcaCACCTTCTGCAGGCGATGTGCCTTGACCTCCGatAAGTGTCCGGTGGACACGGCTAAGTTGACGGTGGTGGTGAACAACATAGCTGTAGCAGAACAGATAGGAGAGCTGTTTATCCACTGTAAATACGGCTGCCGGCTCTTAAACACCACCCCCACTTCCCCTAACGGGGCCGGAGGAGGGGCTTCCCCTAACGGGGCCGGAGGAGGCACTGCTGCTAGTCGGGGTGAAGGGACACCTAAGATGGGAGGACCTGGGAACTTTGAGGTTGATCCAATGGGCTGTCCTTTCACCATCAAGCTCACCACACGCAAGGAGCACGAGGTGAGCTGTGACTACCGTCCAGTGCGCTGTCCCAACAACCCCTCCTGCCCTCCTCTACTCACCATGAACCTAGAGGGACACCTTAAGGAATGTGAACACATCAAGTGCCCTCACTCCAAATACGGatGTGCGTTTATCGGTAACCAGGATACGTATTCTACCCATCTGGACCTGTGTAAGTTTGAAGGGCTGAAGGAGTTCCTGCAACAGACTGATGACAGGTTCCATGAGATGCAGGTGACCCTGTCTCAGAAGGACCAGGACATTGCCTTCCTGAGGTCCATGCTGGGGAAACTATCTGAGAAACTGGACCAGCTGGAGAAGAACCTGGAACTGAAGTTtgATGTCCTGGATGAGAACCAGAGTAAGCTGAGTGAAGACCTGATGGAGTTTAGGAGAGATGCCTCCATGCTCAACgaTGAGTTGTCCCACATCAACGCCAGACTCAACATGGGCATCCTGGGCTCCTACGACCCCCAGCAGATCTTTAAATGTAAAGGGACGTTCGTAGGTCACCAGGGGCCAgtctggtgtctgtgtgtctactcTACAGGGGACCTGCTCTTCTCTGGCTCCTCGGACAAGACcatcaaggtgtGGGATACCTGCACCACCTATAAATGTCAGAAGACTCTGGAGGGTCATGATGGAATCGTGCTGGCACTGTGTATACAGGGgAACAGACTGTATAGTGGCTCAGCTGACTGCACCATCATAGTGTGGGACGTCCAGACCCTGCAGAAGGTGAACACAATCCGTGCCCATGACAACCCGGTGTGTACGCTGGTGTCCTCCCACAGCATGCTGTTCAGCGGATCCCTCAAGGCCATCAAGGTGTGGGACATAGTGGGGACAGAGTTGAAGCTGAAGAAGGAGTTAACAGGACTGAACCACTGGGTTCGTGCTCTGGTGGCCTCTCAGAACCACCTCTACAGTGGATCATACCAGACCATCAAGATCTGGGACATCCGTTCCCTGGACTGTGTTCATGTCCTCCAGACCAGTGGGGGCAGTGTCTATTCCATCGCTGTCACCAACCATCACATCGTCTGTGGCACCTACGAGAACCTTATAcacGTCTGGGATATAGAGTCCAAGGAGCAGGTCCGGACCCTAACGGGTCATGTGGGGACAGTGTACGCTCTAGCAGTCATCtctacaccagaccagaccaaggtGTTCAGCGCCTCCTATGACCGCTCACTCAGGGTGTGGAGCATGGACAACATGATCTGTACCCAGACCCTCCTCAGACACCAGGGGAGTGTAACCGCCCTGGCCGTCAGCAGGGGGCGCCtgttctctggagctgtggacAGCACCGTCAAGgtgtGGACATGTTAGAGGATGCTGATTGGTTTGAGAGGTTGCTGTCGAGGAGAGCAGCTGTATGTTCCCACCTCAGTGGACCACCCTGTGTCAAACGGACCATAtgaactctgacacacacacacacacacacactgattggtTCATCATCCTTCAGGATCATGACTGTTTTTAATATCTCTACTATATGAACTTTAACCCCTGATGTGGGCGGGGTCAGAAGTGATCACGACCTTTGTGTCCTTAGCCCAGTGCATTATGGGTGGAGCTGCCATACCTTAGCTCTGCCCACTGACGACACCAGCCCTCCCCTGATTGGGACAATGCCAGAACTGTGTACTGAAGACTTGTTAGCTCCCCAAGTTAATGCCTTGGCTTCAGTTCAGTCTGACCCGGGGGACTGGACCGGTACTGACCCGGGGGACTGGACCGGTACTGACTGGACCGTTACTGACCTGGGGGACTGGACCGGTACTGACCCGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGTTACTGACCCGGGGGGACTGGACCCGTACTGACCCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGTTACTGAACCGGGGGGACTGGACCGTTACTGAACCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCCGTACTGACCCGGGGGGACTGGAAGCATATGGAACGGGGAGGGGCCTGCCTGAAGTTGTcaaatagaaactcttgttttacGTCAGTGTTTTAGAATGGACAGTGATGGGCTCTGCTAGCAACAACTAGGCTGTGTTCACCACTACTCTGCAGCTCTGTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677239 lncRNA downstream 5200 441063 ~ 441300 (-) True G2338696
TU2677228 lncRNA downstream 22750 423386 ~ 423750 (-) True G2338689
TU2677220 lncRNA downstream 23286 420305 ~ 423214 (-) True G2338685
TU2677221 lncRNA downstream 27822 416014 ~ 418678 (-) True G2338686
TU2677227 lncRNA downstream 30268 414777 ~ 416232 (-) True G2338688
TU2677283 lncRNA upstream 62359 574831 ~ 575040 (-) True G2338728
TU2677284 lncRNA upstream 62928 575400 ~ 575741 (-) True G2338729
TU2677291 lncRNA upstream 65503 577975 ~ 578548 (-) True G2338735
TU2677306 lncRNA upstream 97714 610186 ~ 610524 (-) True G2338744
TU2677309 lncRNA upstream 109441 621913 ~ 622113 (-) True G2338747
XM_036972342.1 mRNA downstream 153180 247351 ~ 293320 (-) True prpsap2
XM_036972331.1 mRNA downstream 328411 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 398200 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 398213 47623 ~ 48287 (-) False LOC118947117
XM_036972314.1 mRNA upstream 268294 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA upstream 286691 799163 ~ 800016 (-) True LOC118947119
XM_036972318.1 mRNA upstream 342890 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 342890 855362 ~ 958476 (-) False LOC110516334
XM_036972324.1 mRNA upstream 342890 855362 ~ 958476 (-) False LOC110516334
TU2677207 other downstream 67617 378179 ~ 378883 (-) True G2338672
TU2677107 other downstream 259845 184377 ~ 186655 (-) True G2338590
TU2677097 other downstream 391138 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 395047 47623 ~ 51453 (-) False LOC118947117
TU2677280 other upstream 57355 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 151065 663537 ~ 666097 (-) True G2338752
TU2677315 other upstream 151756 664228 ~ 664685 (-) True G2338753
TU2677748 other upstream 180033 692505 ~ 695852 (-) False G2339019
TU2677784 other upstream 326711 839183 ~ 844104 (-) False G2339043

Expression Profile