RNA id: TU2677186


Basic Information

Item Value
RNA id TU2677186
length 1256
lncRNA type sense_over
GC content 0.55
exon number 2
gene id LOC110511701
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 446215 ~ 512472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGGACAACATGATCTGTACCCAGACCCTCCTCAGACACCAGGGGAGTGTAACCGCCCTGGCCGTCAGCAGGGGGCGCCtgttctctggagctgtggacAGCACCGTCAAGgtgtGGACATGTTAGAGGATGCTGATTGGTTTGAGAGGTTGCTGTCGAGGAGAGCAGCTGTATGTTCCCACCTCAGTGGACCACCCTGTGTCAAACGGACCATAtgaactctgacacacacacacacacacacactgattggtTCATCATCCTTCAGGATCATGACTGTTTTTAATATCTCTACTATATGAACTTTAACCCCTGATGTGGGCGGGGTCAGAAGTGATCACGACCTTTGTGTCCTTAGCCCAGTGCATTATGGGTGGAGCTGCCATACCTTAGCTCTGCCCACTGACGACACCAGCCCTCCCCTGATTGGGACAATGCCAGAACTGTGTACTGAAGACTTGTTAGCTCCCCAAGTTAATGCCTTGGCTTCAGTTCAGTCTGACCCGGGGGACTGGACCGGTACTGACCCGGGGGACTGGACCGGTACTGACTGGACCGTTACTGACCTGGGGGACTGGACCGGTACTGACCCGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGTTACTGACCCGGGGGGACTGGACCCGTACTGACCCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCGTTACTGAACCGGGGGGACTGGACCGTTACTGAACCGGGGGGACTGGACCGGTACTGACCCGGGGGGACTGGACCCGTACTGACCCGGGGGGACTGGAAGCATATGGAACGGGGAGGGGCCTGCCTGAAGTTGTcaaatagaaactcttgttttacGTCAGTGTTTTAGAATGGACAGTGATGGGCTCTGCTAGCAACAACTAGGCTGTGTTCACCACTACTCTGCAGCTCTGTGTTTAGtgccatgatgatgatgatgatgatggtggtggtgttgatgatgatgatgatgccatGTAGGCTGTGTTCAGGACCACTACCCAGCGAATGTGTCAACGGTTTGAAATTATCTGTACCATACTGAAATATGTCCGTCATTAAGAAGACTGTGTGAATGCGAGAGATGCCTCCATTatccctgttttctctctgtctcctccctcctctggttctctctctgtctcctccctcctctggttctctctctgtctcctccctcccctggttttctctctgtctcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677239 lncRNA downstream 4915 441063 ~ 441300 (-) True G2338696
TU2677228 lncRNA downstream 22465 423386 ~ 423750 (-) True G2338689
TU2677220 lncRNA downstream 23001 420305 ~ 423214 (-) True G2338685
TU2677221 lncRNA downstream 27537 416014 ~ 418678 (-) True G2338686
TU2677227 lncRNA downstream 29983 414777 ~ 416232 (-) True G2338688
TU2677250 lncRNA upstream 17134 467663 ~ 468022 (-) True G2338699
TU2677252 lncRNA upstream 25339 475868 ~ 476688 (-) True G2338701
TU2677256 lncRNA upstream 43573 494102 ~ 494927 (-) True G2338705
TU2677258 lncRNA upstream 56526 507055 ~ 507470 (-) True G2338706
TU2677259 lncRNA upstream 57820 508349 ~ 508769 (-) True G2338707
XM_036972342.1 mRNA downstream 152895 247351 ~ 293320 (-) True prpsap2
XM_036972331.1 mRNA downstream 328126 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 397915 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 397928 47623 ~ 48287 (-) False LOC118947117
XM_036972305.1 mRNA upstream 9168 459697 ~ 512472 (-) False LOC110511701
XM_036972314.1 mRNA upstream 330237 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA upstream 348634 799163 ~ 800016 (-) True LOC118947119
XM_036972318.1 mRNA upstream 404833 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 404833 855362 ~ 958476 (-) False LOC110516334
TU2677207 other downstream 67332 378179 ~ 378883 (-) True G2338672
TU2677107 other downstream 259560 184377 ~ 186655 (-) True G2338590
TU2677097 other downstream 390853 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 394762 47623 ~ 51453 (-) False LOC118947117
TU2677193 other upstream 12003 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 119298 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 213008 663537 ~ 666097 (-) True G2338752
TU2677315 other upstream 213699 664228 ~ 664685 (-) True G2338753
TU2677748 other upstream 241976 692505 ~ 695852 (-) False G2339019

Expression Profile