RNA id: XM_036972314.1


Basic Information

Item Value
RNA id XM_036972314.1
length 2184
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110517482
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 780766 ~ 808870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCGGAGCGCATGCTGTGGCCGAGCACAGAGAAACTGCGCGCTCTCATACCGACACTCCGTattctccctttttcctcctcctcctctcagacacTTCCCAAACAAAGAGAAACACGCGAGGCGGAGGAACAGAGTGCATCCGTCGGGAACCACCGAATCCTCGTTGATCAGAAAAACACACACCGATACACTCTGACCCGAACCGGTTGGAACCGAGAGGAGATTGATTGATCATGTGTAGTAACGGAGCAAGTAACGGGACCAGCGATATGCTACAGATCCAGTTTGGTTTGATCAACTGTGGGAATAAATACCTAACCGCTGAAACGTTCGGTTTTAAAATCAACGCGTCGGCCACGAGCTTGAAGAAGAAGCAgatttggactctggagcagagcGGGGAAGAGGCTGCCGGTAATGTGTTCTGTCTCAAGTCACATCTGGGTCGGTACATAGCGGTGGATAAAGACGGGAACGTTACCGGGGATAGTGAGAGTTCTGGACCCGAGACCCGGTTCATCATCACGGCTCACGACGATGGGAGATGGTCTCTGCAGTCAGAGGTCCATGGCAGATACCTGGGAGGCACAGAGGACAGGATCAGCTGCTTTGCCCAGACTGCATCAGTGGCTGAAAAATGGAGTGTTCACATTGCCATGCATCCTCAGGTGAACATCTTCAGTGTGACCAGGAAGCGTTATGCCCACCTGTCCTCCAAGGTGGATGAGGTCTCTATCGACCGCGACGTCCCGTGGGGGGTGGACTCCCTGATCACCCTGGTGTTCAGAGACCAACGCTACCACCTGCAGACGTCTGATAACCGCTTCCTGAAGAACGACGGCAGCCTGGAGGCCGTGCCGGACAAGACCACCGGATACACGCTGGAGTTCCGCTCCGGCAAGGTGGCGTTCAGGGATTGTTCCGGGCGCTACCTGGCGCCGTCGGGCCCGAGCGGGACCATGAAGAGCGGGAAGACTAGCCGCGTGGGGAAGGATGAGATGTTCTCTCTGGAGCAGAGTCACCCTCAGGTGGTTCTCACCGCCAGCAACGAGAGGAATGTCTCCACCAGGCAAGGCATGGACCTGTCAGCCAATCAGGACGAGGAGGGAGACCAGGAAGTGTTCCAGGTGGAGATGAGTCGTGAGAACAGGAAGTGTGCCTTCCGGACCGCCGCCGGGAAGTACTGGACCCTCACCTCTTCTGGAGGACTACAGTGTACCGCCTCTACtaagactgcCAACTGTTACTTTGACATGGAGTACTGTGGTAAGAAGCTGACTCTCCGTGCCGCCAACGGGAAATACGTCGCAGCCAAGAAGAACGGCCAGCTAGCCGCTACCGTCGATGTTGCCGGTGAGTCGGAGGAGTTCCTGATGAAGCTGATTAACCGTCCAATCATCGTCCTCCGTGGGGAACACGGTTTCATCGGGTGTCGTAAGGTCACAGGAACCCTGGACTCCAACCGTTCCTCGTACGACTACTTTACCCTGACCTTCAGAGAGGGAACGTACAGTTTACAGGaCTCGACGGGGAAGTTCTGGATGGTGGGCAGCGAGGCGTCGGTGGTGAGCAGCAGTGACAACCCCGTCGACTTCCTGTTAGAGTTCTGCGACTACAACAAGGTCGCTATCCGCTCCGTCGCCGACGGGAAGTATCTCCACGGCGACCACGCCGGCGTCTTGAAGGCCAACGCCGACGACCTGGAGACCGCCACGCTCTGGGAGTACTGACCCCCTTCCCGAGACCCCGTTACTACGACAACGAAGCAGCAGCATCCCATaactcctccctctatccctccatccttctctcaaCTCTGTCCTAACGCCTCCCAGACCAGGGCTGTGTTCAGTGGGGTGAAATGTTCACGATATCGtagatgggggggaggggggggggtaatgtaGGACCTAGAGCTGACCCCATTATCTGTTTTCACCTGATAATGAATCCCGTCTCATCTAATCTACATCATACGTTTCTATGTGACGTTCCACCGCTCTGAACAGgacctttttttttgtgtgaacttgacaaaggagggagagaaagagagctggggGAGGTTATGTCCTAATGTAAAGGCTTTCTTCACCTCCTTTTCTCGCTCTGCctttccctcttttctctctctgcctttccctcctcttttctctctgcctttccctcttttctctctgcc

Function

GO: NA

KEGG:

id description
K23551 FSCN1; fascin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677834 lncRNA downstream 16143 763828 ~ 764623 (-) True G2339075
TU2677831 lncRNA downstream 20572 757497 ~ 760194 (-) False G2339072
TU2677825 lncRNA downstream 21005 757915 ~ 759761 (-) False G2339072
TU2677827 lncRNA downstream 21005 757915 ~ 759761 (-) False G2339072
TU2677828 lncRNA downstream 21005 757915 ~ 759761 (-) False G2339072
TU2677816 lncRNA upstream 5214 814084 ~ 815554 (-) True G2339063
TU2677846 lncRNA upstream 10339 819209 ~ 822984 (-) True G2339086
TU2677782 lncRNA upstream 30313 839183 ~ 844104 (-) False G2339043
TU2677786 lncRNA upstream 30313 839183 ~ 844104 (-) False G2339043
TU2677787 lncRNA upstream 30313 839183 ~ 844104 (-) False G2339043
XM_036972303.1 mRNA downstream 268294 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 268294 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 268309 446500 ~ 512457 (-) False LOC110511701
XM_036972342.1 mRNA downstream 487446 247351 ~ 293320 (-) True prpsap2
XM_036972331.1 mRNA downstream 662677 53145 ~ 118089 (-) False LOC110511686
XM_036972318.1 mRNA upstream 46492 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 46492 855362 ~ 958476 (-) False LOC110516334
XM_036972324.1 mRNA upstream 46492 855362 ~ 958476 (-) False LOC110516334
XM_036972317.1 mRNA upstream 46492 855362 ~ 958478 (-) False LOC110516334
XM_036972319.1 mRNA upstream 46492 855362 ~ 958478 (-) False LOC110516334
TU2677748 other downstream 84914 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 114669 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 116081 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 210388 569827 ~ 570378 (-) True G2338725
TU2677193 other downstream 301705 462532 ~ 479061 (-) True LOC110511701
TU2677784 other upstream 30313 839183 ~ 844104 (-) False G2339043
TU2677876 other upstream 132106 940976 ~ 941892 (-) True G2339109
TU2677813 other upstream 154279 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 189061 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 192149 1001019 ~ 1002907 (-) True LOC110513313

Expression Profile