RNA id: XR_005041776.1


Basic Information

Item Value
RNA id XR_005041776.1
length 10405
RNA type mRNA
GC content 0.60
exon number 29
gene id LOC110516334
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 855362 ~ 958479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAGTGAGTTGCGGAGGTCCTTGTAAAAACAATGCGCGTTTCATTGCGGAGGATTTTAATGGTCTGACGAGGGGCCTTGTCTCCCCCCCCCGTTCCTTTAGGACGGCCCAGATGGACCACAGAACAGAACGGCCTGATAACAGTACAGAACCAAAGGATCGATTCAGACCAAAATACGGATTTTTACTGGTTTCTAAACACGTTTCCTTCTCAAGTCAGGATGTCGATGGGCATGGATCCACAGGGAGACCCACCGCCAGCCTAGCCTTTAGCGGCTCTTTGGGAACACTATCCCGGACACAGTGCTAGCTCCGGACGCCCCActcccccccacacactggaGAATGGATGGCCGAGATTTCGGACCCCCTCGGTCTGTCCATGTTCCCCCTCCCCTGTTGGCCATGGAGACCCACCGACTCGGAGCTGCTGCAGCAGCCAGGAGGATCCCTCCCTCGCCCGGACACTTGGGCACAGGGCACCCAGCAAACCTCCACGTCGGGAAATTCCTTCCAACGGTCATGAACCTCCATCCACATCACAGTGATGCCTTCCCAGCAGCCTCCAGTCCCTTCCTGCCGGGCTATTCCGGCCCCTCccccctaacctctgacccagcCTACAGATCACCCAATCAGATGGCTCAGCTCTGGGCCTCACACGCTGCCGCCCACGAAGGCTACGCCCCTCTCCCAGGCGGTCTGTACCCCAGCCCCTACCACCTCCCCCTGGGTAACCTGGAGCCTCCTCCCCCCTCGCTGGGCTTGGCTCAGCACCACCACCTCTACAACGCACCACACCAAGAGAGGTTCTTCCTGCCGGTGTCGTTACCCCAGCcgcctctccaaccctcctccatcccccccagTTCCACCCCCCAGAGTAGCTCCCGGGAGGGGGGCAGGGACCGAGACATACCCTACcgcgaggagagggagagagaggagcctcAGGAGGGGGGCAGGGACCGAGACAGACTCTACCGTgtggcgagggagagagagaagcctcAGGAGGGGGGCAGAGACATACCCTACcgcgaggagagggagagagaggagcctcAGGAGGGGGGCAGGGACCGAGACAGACTCTAccacgaggagagagagaagcctcaggagaggggcagagacagactctaccgcgaggagagagaggagcctcAGGAGGGGGGCAGAAACAGACTCTACcgcgaggagagagagcgaggcgaGAGGGAGCGGTCGAGAGAGGAGCCTCGTCCATACAGTGTGGTAGATCTGACACAGGatgggaggagtagagagagagaacgccaCAGAGAACGAGAGACGGAGCgtgacagagaccgagagagagaaagagaggttctcctccaccacccctctgcTTCTCGACCCCCCCAGGGCTCCTCCTCTTCTGGGCGTTACCCAGAGACTGATGACACACCCACTCGCTCCCCTAACCCcagcccccacacacacacagacaggctgagGAAGACTGAATCTACCTACAGCGGTGGACTCCTCCCTGGCCCCGCCTACCCTGCACACCGGGAGCCTATCAGGGAACAGCGTGTGAGCGCGCCCACTTACGTGCCTTCTGTGGAGGTCTATGATGAGCAGATCGGCCCGATCCAGATCGCATCGCAGGCCAGGGACAAACAGGAcaaactgagagaaagagagagagaaagagagagagaaagagagagggagaggtttccCGAAAAGACTCTATCGGACCGTCGCGCTTCTCTTCCTGGTGATTTGTCCAAtcagagagagcgggaggagggCTCTGTGATCTGCTCCAACGGTTCGGCGCTGAAACGAGACGGTTACGTCAGCCAATCAGGGTTCAGCCCGGACCCCAGGGACACGCCAAAACATGCCATCCGATTGGGCTTGGAGCGGGTGGGGGAAGGGCCTAAATGGAACCCCATCAGCCCATTGGCCAACTACGCCACCAGTCATATGGCAGCTCTGGCCTCCCAGCACGGACACGCACACTCCACAcagcaggcacgcacacacactcatccctCACACAACAACCAGCCGGAACTCAACAGACCCCCTTCCAACCCCCACACAccccaacacagacacacacattcccccCACCCTCCGCCCCAACcccagaggggagaggagggacaggggCGCTACTTGGACACCTCAGCCCTGTACCGCCCAGTGGGGGGGATGAGAGGGGGGTCTGAGGGGGGAGCAGACGGAGGAGAGGTGTCGGCCATGCAGAGTCTGATCAAATACAGCGGGACCTTCCCACCTGAACGCCAGGGGTCCTCCAGGCAGAACACGGACAACCAAGCCGCGTTCGGAGGGCTGGCGTTCATGaggctggagggaggaggaggaggaggaggagcggggGCGAGGCTGATGAAGAGAGAGCTGGAGCGTCCCGACAGCTCTCGGTCGTTGGGACGCGGCGAAGGGGCGGGGCCAGGCGAGGGTGGGGGAGAGGTCCGTCACCCTCCTGTTGGGATAGCTGTGGCAGTGGCCAGACAGAGCAATACAGACTCCCAGAGACCTCTACTACTGCACGCAGGGGTTAAAGACGAGGAGCGGGGGGACGAGCGAGCCCGTCACCGTGGTGATAGACTGGGGTGCCTGGAGCGTGAGCAGGAGAAGTTGCTCAGAGAGAGTAAGGAGCTGGCAGAGTTCACCCAGATGCACCCTCCCTTGGTGTCCAGcgccctgacctctaacctcatGACCTCCAACCTCATGGTGACTGGAGGCTCCTCCCGCTGGCCCCACGACCCCTCCCCCCTGACCTCTCACCCCTGGATGCCCCGCCAAGGAGCACCGCCCATCTGGCTGTCAGGATCCCCCTACGGTTTAGGCCCCTCTCCACTGCACCAGGCCCTCCCTCCCTACCAGCTGGCCAGAGACCCCCAGTCAGGACAGCTGATGGTTATAGCCACAGAACACATCCCACGCTACGGAGGAGATGTGTTGGATGGGGGTGGCGCCCCCCAGTGGCCAGGGGTGTATGGAGCAGGCAGTTCTCTGCAACATGCCGCTCAGCTGCAGATGTTGTCACAGCAACAGATGCTGAGGCAACATGAGCTGGTGATGATTCAACAACATGCTGCTCAGGTCCTGGAGTTGCAGAGGAATGCTCAACTGATGGAGCGTCTGAAGGCCAGTGAACAGAGGGCGGAGCTAGAAGAGAAGACCAATAAGAGGAGTTCCGAGCCCAAACCCCGCCCCTCGCCACgccccactccctccccctccctccactgcCATAAAACTCCCCTCCGTTcacctcccccctccacctcctccctcacccccctgtcctcccccagGCCCACTCTCCAACACCCGGAGGTCCAGAGAGAAAGGTttcacccttcctctcccctccctcgccctcccgcCCCACACTCTGCCTCCCCCCTGAGACCCTCCTCCCCCCTGAGACCCAAGCAGGACgctgacgaggaggaggaggaggggggagagaggggggagaaacagACCACCGCCCCCTATCACCGAATCTACACAGATATCACCCCTGGTTACCGTTACCAGTCCATCACCGCGCCGTTCAGCGCCCTATTCCCCCCCCGCCCCCTCCCCCAACCAGCAGGGGGTAACAAACACCCCTCGGTCTCCTCCCTGCCGCCTCTTCTCCGGGCCACAGCTCCAGACGCCAAGCCTCGGGGCCTGGAACTCCGGCCAGACCAGGGGACCACGCTGAAGCATGACCCCGACCAGGAGCCACCCCAGCTGGGCATGAGTCCTGCTGCCCTGGACCCTCAGCTCCGGACCTCCAGCCCTCCAACCCTCAGCCAaatagagagagacggagagtcaagcctcaaacacacacatctcacccacacacacacacaattacacacacatcCCAGCcttacacacccacacaaacacaccagccTCCACTCAGCCCCCCAGCCCTGTCCTCCTCTACcatccacacagccacacaaacacaccagtgTTAGCCTCCCCTCAGCCCCCAAGCCCTGTCCTCCTCTACcatccacacagccacacaaacacaccagtgTTAGCCTTCCCTCAGCCCCCCAGCCCTGTCCTCCTCTACCATCCACACAGCCACAAGAACAACAgaccgaggaggaagaggaggaggcaggagcGGTCAAGATGGAGGTGTTGACCTACGGCTGCCGAGGAGCCTATCAGCTTCCACCGTCCGTCCCGAAGGTGGAGACTAAACCAGAGGTCACAGAGAAGTCGAGCCCCGCCCATTACCCATCATGCACCACGGCAAGCTCCGAGCGACCGGCCTTTAGACCCAGCCCCGACACACACGCATCCgctcctccccccccctctccctgccctccctctccctcccctctaaaCATCGTCCCTGATGACCCCATGGCTGGTATGATGACGCTGTTTGCTGCCAGTCAGATGCCCCAGGCTGCCCCCCCTGCCCTACCCACCCTGCCCCAGACAGAGGCCTCCTCACTGGGGAGAGACGTGTCCAGTCCTGGGTGTCTGGAGGTCTGGGCTCTGGAGGGGATGACTCTACTCAGCGACATGGCCTCACTAGAGATGGATAGGATACAGCTGGagcagggtgaggtGTTGTGTGGTCTTGACAGCCTGTTAGAGGCAGGTAGAAAGGTGTTGCTGGAGGCCATTGAGAGCCAGTCTCACATCGACCTCCCCAGACAACTACACCCCAGCAAGACCTACAGCTGGAGGATGAGGACAGACCCACAGGAGcagctCTTCAGTAAGCTGTGTCTGGAGGTGTGTGATGGAGGGGAGTCTCAGCATCGGATGAGATTAGCGGAGCTACAGAGGCAGTACAAGGACAAACAGAGACAACTGGACCGGCTGCAGAGACGCTCTGACACCCAAGAGgttcagcagcagcaggaggaggagaggcggagtCTAACCAGACGTGGGCGGGGCCGACCTAGGAAGAGGAAACGTGTAGCGACGCCCCCTGGCAAGATGGAGTCCCGGACAGGGAAgccggGCAGGACAGTGCGGTACTCTGaggtgggggatggagggaggaagaggttcCACTGTTCCAGAGGGGAGGAtgatgagatggagggaggaagaggaggagagaagaggagttgGCAGGACCAGGAGCCGTCCACTAGTCACTCTCTggagGTCTTTAAGGCTCGTCATGGCGGTCTGTGTGACCATGAGCAGCTAGCCTGTGACCTGGACAGAGCTCTCTCCCTGTCCGTACTCAGTACCAGCCGCCGGACGCCCTCTGACCCCggcgggagggatggaggggtgatcCCCTCGTCTGGAGGGAAACagaaggttagaggtcagaggaagacggtttctcctcctcttcctcactcctcTCAACGCTCCAGCTACGACTACAactCTGACTCTGAAGAGGATGTCCCCCGGGGGGGCTGTCACCCCTTCTCAGGGTTGCGACCCCACACAACCCCGCCCAGGAAGAGACCGTCCCCCTCCTCGTCCAATCAGGCGGCTCGGGAGAGGAAACAGAAGCACTTATCCCTCCTGCTGCAGGAGGCGGGGCTTAGCTCCTCCGACGACTCCTTCGATCAAGagTCCTCCACTGAGGAGGACGATGATGAGGAAGAGTTGTCGTGCTCCGAGGGGAGTGAGCTGGAGGAGAGTGGGTTGGGCCTGCTGGCCAGGTTCGCAGCCAGCGCCCTCCCGGTCAACCCCGTCCCCCTGCCCCGTCTCCACGACAAGAAACACCGTAGCAGGCAAAGCATTCTGGgttCTGGTTCTGACCTGTGTCTGAGGAAGTTCCCCTCTCTGCTCCATGGGAAACGCTCCGCACCCGAACTCCCCCTGTTACCCCCGGCAACGCGCCACGGCGACCACACTAGCAACGAGACCTCGCCGGTCAAACGCAAACCTCGCCCATCTCCTCGGTCGCCCCGGAGATTCACCTTTGACCCCGCCGGGGGACTAGCGGGAGGGGCTagcgaggaggagggatggacaCGCAGACGCAGCGAGAGGATTTTCCTTCATGATGCCTCCACCAATCAGATCTCTCCCTCCAGTAAAAACCCTCCAATCAGCACTAAACCCGCCCCCAGACCTAAAACCACACCCAGGGAGGGGAAAGACTGGAAGaAGAAGAGGCTGAAGGACCCTCCCCTGACCCCGCCCTCTCTGTCTAGTCCAATCACAGAGAGCCCGGTAGCCCCTCCCCTCAGCCCTGCACGCAAGAGCCAATCAAAAGCCAAGGCTAAACCCCGAGAGGCTCGTGGAGCGGTCAGTAGGCTGATGAAGAGTATGGAGGCTGATGAAGACTTCGAACCCAGTCAGGACAGCAGCTTCTCTGAAGACGATGGACCTCCTCCGTCACACAGCAGTCTGGCCGAGAGGACCCTGTCGTCTGCTCCGGTCCAGTGTGTGTTAGATAAAGACTCTCTTCAGGATGGTCTGAGGGTTCTGATCCCCATGGATGATCAGCTGCTGTATGCTGGACACGTCAACACGGTACACTCCCCGGACATttacagtgtggtggtggagggggagagagggaacagacctcaTATCTACTGTCTAGAACAACTCCTGCAGGAGGCTATTGTGGATGTGATGCCTCCGTCAGTCTGGTATCTTCCTGAAGGCTGTCGTGTTGCTGCATACTGGAGCCAGCAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGAAGTTCAGACGGTGATGACAGTGATGACCTCATCACGGTGGAGTTTGATGACGGTGACACGGGTCGCATCCCCCTCTCCCACATCAGACTGCTGCCCCCTGACTACAAGATACAGTGCGCTGAGCCCTCCCCTGCGCTGCTAGTGGCCAGCTGCTCCAGGAGGCGTGTCAGGAAGTGCAGCAAGGACACCAGTGAGACGAGGCCTAAAGCAGGGGACTCCGCCCCCAAGGGCAGAGGGAGACCGGCCAAGAAACCCAAACCCAAACCTGAGCCCCCAGTGAGCCCAGACCCCCGGGAGACGATGCCCCCCCCGGGACCCAGCCAGGCTCCAGACAGACCTCAGCTCCCCACCAGACCAGCCCAGGACAGGCCCTCTTCCTCCCAGAGACCTGCTCAGGAAAGACCCCTGTCTGCCCCCAGGCCGGGACCAGGCCGACCCTCCAAGCCCACCAGCACCCCCAGCCTGCCTGCCCCCCCACGCAGCCAGAACCCTAGGagacccagcccagcctctccCGAGCCCCCCTCCCTCTACCACCCAGCCCCTTACGGGAAGATACTAAGGGTGGACCTGTATAGCCAACCCAACCTCACCTCTTGTAACGTCAGCACccaacctaaccctaaaaccaaccctaAGTCTAAACTCTCCCCTCCACTACTTAAACCCAACTCTACTTCCCCTATCATCAGACCCAAGCCTCTTctacctaaccctaaaactaaccttaCCTCCGTACCAAAATCCAAACCTAGACCTAAGTCTACAGCAGAACTCCCTGGGCCTGCAGCTAACTTTAATCCTGATCACAACAAATCCAGAACCGCTCCCAAAGCAATCTCCAGACCCAAACAGAACCATAACAAACCCAGACCCACCCCGGATCCTTCTACCAGGCCCAGAACCAGCCCTGGGCCCAGCTCCAGTACCTCTAAACCCAGACCCATCCCCGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCCAGTACCTCTAAACCCAGACCCATCCCCGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAATCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGACCCAGCTCAGACCTCTCTGCTGTCAGATCCAGACTGGACCCTAGCACCTTTATTCCTGGTATCTCCAGACCCAGGCATGTCCCGGGGGAGGGCGGGGTGGGAGGGCAGGGCGGGGTGCGACAGGGGCGTAAGGCCCTCCTAGAGGAACCCCTAGTAAAGCTGGACCACGAGGGTGTGACCTCACCCAAGACCAAGAAGACCAAGGCTCTGATGCTGCTGGAGGCCAGGGGCTTACGGCAAGAACACACACCCCTCGCCACGGCCGCAGCCAGCCAGAAGCCGGCGAGGGTAAAGGGGAGGGCTCCGGAGAGCGAGGCAGGGCTGCTGGAGGCCAAGGACTTACGGCAAGAACACACACCCCTCGCCACGGCCGCAGCCACCCAGAAGCCGGCGAGGGTCAAGGGGAGGGCTCCGGAGAGCGAGGCGGGGCTGCTGGGGAGAGAACCCGCCTACAGAACGCCTTCTCTGGGCAGAGAAAGAGACCGGGgtggagggggggacagagaaccaaagagagaggagagaacgaaacaaggggaagagaagagaggggaggagacaggggggtCTCACGGCAGCAGTAGTTCAGgatctgaggaagaggaggagacaaggaagaAAACGAAGTGTAGCTCCAGCTgctcccacccctcctccccagcctcctcctcctcatcctcctctagcacctcctcttcctcttcctcctccactgaCGAGGAGTCCTCTTGTAGTTCTGACGAGGAGACCGCCCTCGCTCCCCCTGCacctctccccgtctccccccctcCAACTACCCCacaggaggaggtagaggtggaggaagagaaggaggaagaggaagaaattAAGAAGTTGAAAAAGgcggaagaggaagaggaggaagaagtaTTAGAAGAAGAtcaatctccctcctctcctcccccgtctATCTCTCCGTCCTCCCAGCCAGCCAGGCCCCGGGGTCGTCCAGCCCGGCAGAAGTCCCAGGGAGGTGTGGGGTCGGTGGGCAGGCCACGGCGCAGGGAGGGGgcccacctccccaccaccaagGAGCTGGCTAAGAGACAGCGATTACCGAGCGTAGAGAACAGACCCAAGAtctctgccttcctgcctgccagACAGCTCTGGAAGTGGTTCGGTAATCCCACACAGAGGCGTGGTATGAAAGGGAAGGCTAAGAAGCTGTTCTACAAGGCCATCGTGCGGGGGAGAGAGATGATTGGTATCGGGGACTGCGCCGTGTTCCTTTCAGCCGGCCGACCCAACCTGCCCTTCATAGGGAAGATCCAGAGCATGTGGGAGAGCTGGGGATCCAACATGGTGGTCAGAGTCAACTGGTTTTATCACCCGGAGGAGACCAACCCTGGCAAGAAACTACACGACAAGAAggtaggggtcagaggtcagctgGTTTTATCACCCGGAGGAGACCAACCCTGGCAAGAAACTACACGACAAGAAggtaggggtcagaggtcagctgGTTTTATCACCCGGAGGAGACCAACCCTGGCAAGAAACTACACGACAAGAAggtaggggtcagaggtcaactgGTTTTATCACCCGGAGGAGACCAACCCTGGCAAGAAACTACACGACAAGAAgaACTGGGATCAGATGTCTGGTCAGTCTCTTccttcatctctgctctcctctaaCCAGAGGAAAGACTTCATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677860 lncRNA downstream 545 857248 ~ 857780 (-) True G2339096
TU2677789 lncRNA downstream 14221 839183 ~ 844104 (-) False G2339043
TU2677894 lncRNA upstream 39453 997931 ~ 999857 (-) False G2339121
TU2677898 lncRNA upstream 39453 997931 ~ 999857 (-) False G2339121
TU2677904 lncRNA upstream 51577 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA upstream 51793 1010271 ~ 1010630 (-) True G2339123
TU2677803 lncRNA upstream 63474 1021952 ~ 1024681 (-) True G2339050
XM_036972314.1 mRNA downstream 49455 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA downstream 58309 799163 ~ 800016 (-) True LOC118947119
XM_036972303.1 mRNA downstream 345853 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 345853 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 345868 446500 ~ 512457 (-) False LOC110511701
XM_036972330.1 mRNA upstream 15263 973741 ~ 1003184 (-) False LOC110513313
XM_036972326.1 mRNA upstream 68267 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 125494 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 199574 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 368190 1326668 ~ 1417233 (-) False LOC110516509
TU2677784 other downstream 14221 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 162473 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 192228 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 193640 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 287947 569827 ~ 570378 (-) True G2338725
TU2677813 other upstream 4671 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 39453 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 42541 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 68521 1026999 ~ 1029218 (-) True LOC110518374
TU2677965 other upstream 149254 1107732 ~ 1122639 (-) True G2339156

Expression Profile