RNA id: XM_036972322.1


Basic Information

Item Value
RNA id XM_036972322.1
length 10037
RNA type mRNA
GC content 0.61
exon number 28
gene id LOC110516334
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 855362 ~ 958479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGAGTGAGTTGCGGAGGTCCTTGTAAAAACAATGCGCGTTTCATTGCGGAGGATTTTAATGGTCTGACGAGGGGCCTTGTCTCCCCCCCCCGTTCCTTTAGGACGGCCCAGATGGACCACAGAACAGAACGGCCTGATAACAGTACAGAACCAAAGGATCGATTCAGACCAAAATACGGATTTTTACTGGTTTCTAAACACGTTTCCTTCTCAAGTCAGGATGTCGATGGGCATGGATCCACAGGGAGACCCACCGCCAGCCTAGCCTTTAGCGGCTCTTTGGGAACACTATCCCGGACACAGTGCTAGCTCCGGACGCCCCActcccccccacacactggaGAATGGATGGCCGAGATTTCGGACCCCCTCGGTCTGTCCATGTTCCCCCTCCCCTGTTGGCCATGGAGACCCACCGACTCGGAGCTGCTGCAGCAGCCAGGAGGATCCCTCCCTCGCCCGGACACTTGGGCACAGGGCACCCAGCAAACCTCCACGTCGGGAAATTCCTTCCAACGGTCATGAACCTCCATCCACATCACAGTGATGCCTTCCCAGCAGCCTCCAGTCCCTTCCTGCCGGGCTATTCCGGCCCCTCccccctaacctctgacccagcCTACAGATCACCCAATCAGATGGCTCAGCTCTGGGCCTCACACGCTGCCGCCCACGAAGGCTACGCCCCTCTCCCAGGCGGTCTGTACCCCAGCCCCTACCACCTCCCCCTGGGTAACCTGGAGCCTCCTCCCCCCTCGCTGGGCTTGGCTCAGCACCACCACCTCTACAACGCACCACACCAAGAGAGGTTCTTCCTGCCGGTGTCGTTACCCCAGCcgcctctccaaccctcctccatcccccccagTTCCACCCCCCAGAGTAGCTCCCGGGAGGGGGGCAGGGACCGAGACATACCCTACcgcgaggagagggagagagaggagcctcAGGAGGGGGGCAGGGACCGAGACAGACTCTACCGTgtggcgagggagagagagaagcctcAGGAGGGGGGCAGAGACATACCCTACcgcgaggagagggagagagaggagcctcAGGAGGGGGGCAGGGACCGAGACAGACTCTAccacgaggagagagagaagcctcaggagaggggcagagacagactctaccgcgaggagagagaggagcctcAGGAGGGGGGCAGAAACAGACTCTACcgcgaggagagagagcgaggcgaGAGGGAGCGGTCGAGAGAGGAGCCTCGTCCATACAGTGTGGTAGATCTGACACAGGatgggaggagtagagagagagaacgccaCAGAGAACGAGAGACGGAGCgtgacagagaccgagagagagaaagagaggttctcctccaccacccctctgcTTCTCGACCCCCCCAGGGCTCCTCCTCTTCTGGGCGTTACCCAGAGACTGATGACACACCCACTCGCTCCCCTAACCCcagcccccacacacacacagacaggctgagGAAGACTGAATCTACCTACAGCGGTGGACTCCTCCCTGGCCCCGCCTACCCTGCACACCGGGAGCCTATCAGGGAACAGCGTGTGAGCGCGCCCACTTACGTGCCTTCTGTGGAGGTCTATGATGAGCAGATCGGCCCGATCCAGATCGCATCGCAGGCCAGGGACAAACAGGAcaaactgagagaaagagagagagaaagagagagagaaagagagagggagaggtttccCGAAAAGACTCTATCGGACCGTCGCGCTTCTCTTCCTGGTGATTTGTCCAAtcagagagagcgggaggagggCTCTGTGATCTGCTCCAACGGTTCGGCGCTGAAACGAGACGGTTACGTCAGCCAATCAGGGTTCAGCCCGGACCCCAGGGACACGCCAAAACATGCCATCCGATTGGGCTTGGAGCGGGTGGGGGAAGGGCCTAAATGGAACCCCATCAGCCCATTGGCCAACTACGCCACCAGTCATATGGCAGCTCTGGCCTCCCAGCACGGACACGCACACTCCACAcagcaggcacgcacacacactcatccctCACACAACAACCAGCCGGAACTCAACAGACCCCCTTCCAACCCCCACACAccccaacacagacacacacattcccccCACCCTCCGCCCCAACcccagaggggagaggagggacaggggCGCTACTTGGACACCTCAGCCCTGTACCGCCCAGTGGGGGGGATGAGAGGGGGGTCTGAGGGGGGAGCAGACGGAGGAGAGGTGTCGGCCATGCAGAGTCTGATCAAATACAGCGGGACCTTCCCACCTGAACGCCAGGGGTCCTCCAGGCAGAACACGGACAACCAAGCCGCGTTCGGAGGGCTGGCGTTCATGaggctggagggaggaggaggaggaggaggagcggggGCGAGGCTGATGAAGAGAGAGCTGGAGCGTCCCGACAGCTCTCGGTCGTTGGGACGCGGCGAAGGGGCGGGGCCAGGCGAGGGTGGGGGAGAGGTCCGTCACCCTCCTGTTGGGATAGCTGTGGCAGTGGCCAGACAGAGCAATACAGACTCCCAGAGACCTCTACTACTGCACGCAGGGGTTAAAGACGAGGAGCGGGGGGACGAGCGAGCCCGTCACCGTGGTGATAGACTGGGGTGCCTGGAGCGTGAGCAGGAGAAGTTGCTCAGAGAGAGTAAGGAGCTGGCAGAGTTCACCCAGATGCACCCTCCCTTGGTGTCCAGcgccctgacctctaacctcatGACCTCCAACCTCATGGTGACTGGAGGCTCCTCCCGCTGGCCCCACGACCCCTCCCCCCTGACCTCTCACCCCTGGATGCCCCGCCAAGGAGCACCGCCCATCTGGCTGTCAGGATCCCCCTACGGTTTAGGCCCCTCTCCACTGCACCAGGCCCTCCCTCCCTACCAGCTGGCCAGAGACCCCCAGTCAGGACAGCTGATGGTTATAGCCACAGAACACATCCCACGCTACGGAGGAGATGTGTTGGATGGGGGTGGCGCCCCCCAGTGGCCAGGGGTGTATGGAGCAGGCAGTTCTCTGCAACATGCCGCTCAGCTGCAGATGTTGTCACAGCAACAGATGCTGAGGCAACATGAGCTGGTGATGATTCAACAACATGCTGCTCAGGTCCTGGAGTTGCAGAGGAATGCTCAACTGATGGAGCGTCTGAAGGCCAGTGAACAGAGGGCGGAGCTAGAAGAGAAGACCAATAAGAGGAGTTCCGAGCCCAAACCCCGCCCCTCGCCACgccccactccctccccctccctccactgcCATAAAACTCCCCTCCGTTcacctcccccctccacctcctccctcacccccctgtcctcccccagGCCCACTCTCCAACACCCGGAGGTCCAGAGAGAAAGGTttcacccttcctctcccctccctcgccctcccgcCCCACACTCTGCCTCCCCCCTGAGACCCTCCTCCCCCCTGAGACCCAAGCAGGACgctgacgaggaggaggaggaggggggagagaggggggagaaacagACCACCGCCCCCTATCACCGAATCTACACAGATATCACCCCTGGTTACCGTTACCAGTCCATCACCGCGCCGTTCAGCGCCCTATTCCCCCCCCGCCCCCTCCCCCAACCAGCAGGGGGTAACAAACACCCCTCGGTCTCCTCCCTGCCGCCTCTTCTCCGGGCCACAGCTCCAGACGCCAAGCCTCGGGGCCTGGAACTCCGGCCAGACCAGGGGACCACGCTGAAGCATGACCCCGACCAGGAGCCACCCCAGCTGGGCATGAGTCCTGCTGCCCTGGACCCTCAGCTCCGGACCTCCAGCCCTCCAACCCTCAGCCAaatagagagagacggagagtcaagcctcaaacacacacatctcacccacacacacacacaattacacacacatcCCAGCcttacacacccacacaaacacaccagccTCCACTCAGCCCCCCAGCCCTGTCCTCCTCTACcatccacacagccacacaaacacaccagtgTTAGCCTCCCCTCAGCCCCCAAGCCCTGTCCTCCTCTACcatccacacagccacacaaacacaccagtgTTAGCCTTCCCTCAGCCCCCCAGCCCTGTCCTCCTCTACCATCCACACAGCCACAAGAACAACAgaccgaggaggaagaggaggaggcaggagcGGTCAAGATGGAGGTGTTGACCTACGGCTGCCGAGGAGCCTATCAGCTTCCACCGTCCGTCCCGAAGGTGGAGACTAAACCAGAGGTCACAGAGAAGTCGAGCCCCGCCCATTACCCATCATGCACCACGGCAAGCTCCGAGCGACCGGCCTTTAGACCCAGCCCCGACACACACGCATCCgctcctccccccccctctccctgccctccctctccctcccctctaaaCATCGTCCCTGATGACCCCATGGCTGGTATGATGACGCTGTTTGCTGCCAGTCAGATGCCCCAGGCTGCCCCCCCTGCCCTACCCACCCTGCCCCAGACAGAGGCCTCCTCACTGGGGAGAGACGTGTCCAGTCCTGGGTGTCTGGAGGTCTGGGCTCTGGAGGGGATGACTCTACTCAGCGACATGGCCTCACTAGAGATGGATAGGATACAGCTGGagcagggtgaggtGTTGTGTGGTCTTGACAGCCTGTTAGAGGCAGGTAGAAAGGTGTTGCTGGAGGCCATTGAGAGCCAGTCTCACATCGACCTCCCCAGACAACTACACCCCAGCAAGACCTACAGCTGGAGGATGAGGACAGACCCACAGGAGcagctCTTCAGTAAGCTGTGTCTGGAGGTGTGTGATGGAGGGGAGTCTCAGCATCGGATGAGATTAGCGGAGCTACAGAGGCAGTACAAGGACAAACAGAGACAACTGGACCGGCTGCAGAGACGCTCTGACACCCAAGAGgttcagcagcagcaggaggaggagaggcggagtCTAACCAGACGTGGGCGGGGCCGACCTAGGAAGAGGAAACGTGTAGCGACGCCCCCTGGCAAGATGGAGTCCCGGACAGGGAAgccggGCAGGACAGTGCGGTACTCTGaggtgggggatggagggaggaagaggttcCACTGTTCCAGAGGGGAGGAtgatgagatggagggaggaagaggaggagagaagaggagttgGCAGGACCAGGAGCCGTCCACTAGTCACTCTCTggagGTCTTTAAGGCTCGTCATGGCGGTCTGTGTGACCATGAGCAGCTAGCCTGTGACCTGGACAGAGCTCTCTCCCTGTCCGTACTCAGTACCAGCCGCCGGACGCCCTCTGACCCCggcgggagggatggaggggtgatcCCCTCGTCTGGAGGGAAACagaaggttagaggtcagaggaagacggtttctcctcctcttcctcactcctcTCAACGCTCCAGCTACGACTACAactCTGACTCTGAAGAGGATGTCCCCCGGGGGGGCTGTCACCCCTTCTCAGGGTTGCGACCCCACACAACCCCGCCCAGGAAGAGACCGTCCCCCTCCTCGTCCAATCAGGCGGCTCGGGAGAGGAAACAGAAGCACTTATCCCTCCTGCTGCAGGAGGCGGGGCTTAGCTCCTCCGACGACTCCTTCGATCAAGagTCCTCCACTGAGGAGGACGATGATGAGGAAGAGTTGTCGTGCTCCGAGGGGAGTGAGCTGGAGGAGAGTGGGTTGGGCCTGCTGGCCAGGTTCGCAGCCAGCGCCCTCCCGGTCAACCCCGTCCCCCTGCCCCGTCTCCACGACAAGAAACACCGTAGCAGGCAAAGCATTCTGGgttCTGGTTCTGACCTGTGTCTGAGGAAGTTCCCCTCTCTGCTCCATGGGAAACGCTCCGCACCCGAACTCCCCCTGTTACCCCCGGCAACGCGCCACGGCGACCACACTAGCAACGAGACCTCGCCGGTCAAACGCAAACCTCGCCCATCTCCTCGGTCGCCCCGGAGATTCACCTTTGACCCCGCCGGGGGACTAGCGGGAGGGGCTagcgaggaggagggatggacaCGCAGACGCAGCGAGAGGATTTTCCTTCATGATGCCTCCACCAATCAGATCTCTCCCTCCAGTAAAAACCCTCCAATCAGCACTAAACCCGCCCCCAGACCTAAAACCACACCCAGGGAGGGGAAAGACTGGAAGaAGAAGAGGCTGAAGGACCCTCCCCTGACCCCGCCCTCTCTGTCTAGTCCAATCACAGAGAGCCCGGTAGCCCCTCCCCTCAGCCCTGCACGCAAGAGCCAATCAAAAGCCAAGGCTAAACCCCGAGAGGCTCGTGGAGCGGTCAGTAGGCTGATGAAGAGTATGGAGGCTGATGAAGACTTCGAACCCAGTCAGGACAGCAGCTTCTCTGAAGACGATGGACCTCCTCCGTCACACAGCAGTCTGGCCGAGAGGACCCTGTCGTCTGCTCCGGTCCAGTGTGTGTTAGATAAAGACTCTCTTCAGGATGGTCTGAGGGTTCTGATCCCCATGGATGATCAGCTGCTGTATGCTGGACACGTCAACACGGTACACTCCCCGGACATttacagtgtggtggtggagggggagagagggaacagacctcaTATCTACTGTCTAGAACAACTCCTGCAGGAGGCTATTGTGGATGTGATGCCTCCGTCAGTCTGGTATCTTCCTGAAGGCTGTCGTGTTGCTGCATACTGGAGCCAGCAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGTAACGCACAGTACCACTGTCTCTACCCCGGCACCGTAGTCAACGGAAGTTCAGACGGTGATGACAGTGATGACCTCATCACGGTGGAGTTTGATGACGGTGACACGGGTCGCATCCCCCTCTCCCACATCAGACTGCTGCCCCCTGACTACAAGATACAGTGCGCTGAGCCCTCCCCTGCGCTGCTAGTGGCCAGCTGCTCCAGGAGGCGTGTCAGGAAGTGCAGCAAGGACACCAGTGAGACGAGGCCTAAAGCAGGGGACTCCGCCCCCAAGGGCAGAGGGAGACCGGCCAAGAAACCCAAACCCAAACCTGAGCCCCCAGTGAGCCCAGACCCCCGGGAGACGATGCCCCCCCCGGGACCCAGCCAGGCTCCAGACAGACCTCAGCTCCCCACCAGACCAGCCCAGGACAGGCCCTCTTCCTCCCAGAGACCTGCTCAGGAAAGACCCCTGTCTGCCCCCAGGCCGGGACCAGGCCGACCCTCCAAGCCCACCAGCACCCCCAGCCTGCCTGCCCCCCCACGCAGCCAGAACCCTAGGagacccagcccagcctctccCGAGCCCCCCTCCCTCTACCACCCAGCCCCTTACGGGAAGATACTAAGGGTGGACCTGTATAGCCAACCCAACCTCACCTCTTGTAACGTCAGCACccaacctaaccctaaaaccaaccctaAGTCTAAACTCTCCCCTCCACTACTTAAACCCAACTCTACTTCCCCTATCATCAGACCCAAGCCTCTTctacctaaccctaaaactaaccttaCCTCCGTACCAAAATCCAAACCTAGACCTAAGTCTACAGCAGAACTCCCTGGGCCTGCAGCTAACTTTAATCCTGATCACAACAAATCCAGAACCGCTCCCAAAGCAATCTCCAGACCCAAACAGAACCATAACAAACCCAGACCCACCCCGGATCCTTCTACCAGGCCCAGAACCAGCCCTGGGCCCAGCTCCAGTACCTCTAAACCCAGACCCATCCCCGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCCAGTACCTCTAAACCCAGACCCATCCCCGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAATCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCCCTAAACCCAGAACCAGCCCTGGGCCCAGCTCTAGTACCTCTAAACCCAGACCCAGCTCAGACCTCTCTGCTGTCAGATCCAGACTGGACCCTAGCACCTTTATTCCTGGTATCTCCAGACCCAGGCATGTCCCGGGGGAGGGCGGGGTGGGAGGGCAGGGCGGGGTGCGACAGGGGCGTAAGGCCCTCCTAGAGGAACCCCTAGTAAAGCTGGACCACGAGGGTGTGACCTCACCCAAGACCAAGAAGACCAAGGCTCTGATGCTGCTGGAGGCCAGGGGCTTACGGCAAGAACACACACCCCTCGCCACGGCCGCAGCCAGCCAGAAGCCGGCGAGGGTAAAGGGGAGGGCTCCGGAGAGCGAGGCAGGGCTGCTGGAGGCCAAGGACTTACGGCAAGAACACACACCCCTCGCCACGGCCGCAGCCACCCAGAAGCCGGCGAGGGTCAAGGGGAGGGCTCCGGAGAGCGAGGCGGGGCTGCTGGGGAGAGAACCCGCCTACAGAACGCCTTCTCTGGGCAGAGAAAGAGACCGGGgtggagggggggacagagaaccaaagagagaggagagaacgaaacaaggggaagagaagagaggggaggagacaggggggtCTCACGGCAGCAGTAGTTCAGgatctgaggaagaggaggagacaaggaagaAAACGAAGTGTAGCTCCAGCTgctcccacccctcctccccagcctcctcctcctcatcctcctctagcacctcctcttcctcttcctcctccactgaCGAGGAGTCCTCTTGTAGTTCTGACGAGGAGACCGCCCTCGCTCCCCCTGCacctctccccgtctccccccctcCAACTACCCCacaggaggaggtagaggtggaggaagagaaggaggaagaggaagaaattAAGAAGTTGAAAAAGgcggaagaggaagaggaggaagaagtaTTAGAAGAAGAtcaatctccctcctctcctcccccgtctATCTCTCCGTCCTCCCAGCCAGCCAGGCCCCGGGGTCGTCCAGCCCGGCAGAAGTCCCAGGGAGGTGTGGGGTCGGTGGGCAGGCCACGGCGCAGGGAGGGGgcccacctccccaccaccaagGAGCTGGCTAAGAGACAGCGATTACCGAGCGTAGAGAACAGACCCAAGAtctctgccttcctgcctgccagACAGCTCTGGAAGTGGTTCGGTAATCCCACACAGGTGAGAGGGAGAACACAGGTGAGAGGGAGAACACAGGTGAGAGGGAGAACACAGGTGAGAGGGAGAACACAGGTGAGAGGGAGAACACACGCTTGGGATTGGTATTTTGAAGCTCTCGATGACACTTGAGTcaggttttttgggggggtggggggggctggG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677860 lncRNA downstream 2463 857248 ~ 857780 (-) True G2339096
TU2677791 lncRNA downstream 16139 839183 ~ 844104 (-) False G2339043
TU2677894 lncRNA upstream 39452 997931 ~ 999857 (-) False G2339121
TU2677898 lncRNA upstream 39452 997931 ~ 999857 (-) False G2339121
TU2677904 lncRNA upstream 51576 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA upstream 51792 1010271 ~ 1010630 (-) True G2339123
TU2677803 lncRNA upstream 63473 1021952 ~ 1024681 (-) True G2339050
XM_036972314.1 mRNA downstream 51373 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA downstream 60227 799163 ~ 800016 (-) True LOC118947119
XM_036972303.1 mRNA downstream 347771 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 347771 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 347786 446500 ~ 512457 (-) False LOC110511701
XM_036972330.1 mRNA upstream 15262 973741 ~ 1003184 (-) False LOC110513313
XM_036972326.1 mRNA upstream 68266 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 125493 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 199573 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 368189 1326668 ~ 1417233 (-) False LOC110516509
TU2677784 other downstream 16139 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 164391 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 194146 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 195558 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 289865 569827 ~ 570378 (-) True G2338725
TU2677813 other upstream 4670 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 39452 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 42540 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 68520 1026999 ~ 1029218 (-) True LOC110518374
TU2677965 other upstream 149253 1107732 ~ 1122639 (-) True G2339156

Expression Profile