RNA id: TU2677806


Basic Information

Item Value
RNA id TU2677806
length 845
RNA type TUCP
GC content 0.57
exon number 2
gene id LOC110513313
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 973741 ~ 1003184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgactgactgaaaccgGTGAACCGACAACTTCTTATTCATACCAATATAATACACTAGGATGACGCAAGTCAGGTGATTTCCCATTTAAGGAGCTGTATAACGGTGTTTGAGGTCGAGCGACAGCAGCGTCAAGCCAGCGGCGGTGGACGTTTCTCCGCCTGAAGCAGCACCGGGAGAGCAGGACGGGAGCCGCGATCCGGCAGCGGGAGTTCCCTTCTGATGGAGGCGGTTAACGGACAGGAGACAGCAGCACCGAGAGCATCGACCCGGGAGACCACGGGAGAATAAAGACGGTTCCGTTGTCCTAGGAATAGAGGCTCAGACGGCGTCGTAAGGAAAGGTCACCATCACCCCAAAGCCTCCTGCCTCTCCACTgttagctctgtgtgtgtcttggaGGGAAGGTTGtgtagcctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctccaggtgtgTGTAGCGTGTGTTTTGCAAGAAGAGTGTTAGGAGTGTGTATtcctttgcgtgtgtgtgtgtagtgtaccaTAATGAGTACAGCAGGAGTGGAGCGACGGAGGCCAACCCCAGCACAGAcccctgaggagagagagggatggggccagacagggagagaggagagagagggatggggccagacagggagagaggagagacagggatgggaccagacagggagagaggagagagagggatggggccagacagggagagaggagagagagggatggggccagacagggagagaggagagagagggatgggaccagacagggagaga

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677894 lncRNA downstream 1162 997931 ~ 999857 (-) False G2339121
TU2677898 lncRNA downstream 1162 997931 ~ 999857 (-) False G2339121
TU2677883 lncRNA downstream 56850 943375 ~ 944169 (-) True G2339111
TU2677880 lncRNA downstream 58022 942143 ~ 942997 (-) True G2339110
TU2677810 lncRNA downstream 77412 893288 ~ 923607 (-) True G2339057
TU2677904 lncRNA upstream 7148 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA upstream 7364 1010271 ~ 1010630 (-) True G2339123
TU2677803 lncRNA upstream 19045 1021952 ~ 1024681 (-) True G2339050
TU2677924 lncRNA upstream 34893 1037800 ~ 1040389 (-) False G2339133
TU2677921 lncRNA upstream 37080 1039987 ~ 1040786 (-) True G2339133
XM_036972321.1 mRNA downstream 42540 855362 ~ 958479 (-) False LOC110516334
XM_036972322.1 mRNA downstream 42540 860243 ~ 958479 (-) True LOC110516334
XM_036972319.1 mRNA downstream 42541 855362 ~ 958478 (-) False LOC110516334
XM_036972326.1 mRNA upstream 23838 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 81065 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 155145 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 323761 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 323761 1326668 ~ 1417782 (-) False LOC110516509
TU2677900 other downstream 1162 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 31865 963149 ~ 969154 (-) True G2339060
TU2677876 other downstream 59127 940976 ~ 941892 (-) True G2339109
TU2677784 other downstream 156915 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 305167 692505 ~ 695852 (-) False G2339019
TU2677915 other upstream 24092 1026999 ~ 1029218 (-) True LOC110518374
TU2677965 other upstream 104825 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 155640 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 232297 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 239167 1242074 ~ 1243382 (-) False G2339205

Expression Profile