RNA id: XM_036972326.1


Basic Information

Item Value
RNA id XM_036972326.1
length 2749
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110518374
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1026745 ~ 1048179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTTCAACCTGCCCGCCTTCTGGAGGCAGGAGAAACAAGATGGCAGATCAACAAGACAAACGGGACTTGTCTTAGTTAATCTAACTTTTCCCACTGTTGATTGCTACATATTAAAACTATATACAATTAGCTAGACAAAGCAATCTAGCTCCCACGCATTTTTATGGTTGATATATCAGCTACTAAAAGCGAGATTTCACAGATTAGCTGATTGCTAACTGCCGTTAGACAGCTAAGCTAGGCTAGGCTAAACTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAACTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAGCTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAGCTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAGCTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAACTAGCTTGTTTCTGTCTGGTCGGAGCGGGGTTAGACTGCTAGGCTAGGCTAAGCTAGCTTGTTTCTGTCTGGTCGGAGCGTAGTGAGACCTGCCATCATGCAGGACCTGTTAGCCACCGTGGACCACATCAAGTTTGATCTAGAGATAGCTGTGGAGCAGCAGCTGGGGGCTCAGCCTCTCCCTTTCCCCGGGATGGACAAGTCCGGGGCTGCTGTGTGTGAGTTCTTCATGAGAGCTGCCTGTCTCAAAGGTGGGATGTGTCCGTTCCGTCACATCAGTGGGGAGAAGACGGTGGTGTGTAAACACTGGCTCAGAGGACTCTGTAAGAAGGGAGACCAGTGTGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTGTTACTTCTACTCCAAGTTCGgAGAGTGCAGTAACAAGGAGTGTCCGTTCCTCCACATCGACCCAGAGTCTAAGATCAAAGACTGTCCCTGGTATGACAGAGGCTTCTGCAAACATGgTCCAGACTGTAGACATCGCCACACCAGAAGAGTAATCTGTATGAACTACTTGGTTGGTTTCTGTCCAGAGGGCCGGTCCTGTAAATTCATGCACCCGCGGTTTGAGCTGCCGATGGGAGCCACAGAACAGCCTCCTCTACCAGCACAGATACTGGGTCACCAGaagCCGTTGCCTTCGCTTGGCCGGTCGTCCCTGTCACTCATCCAGCTGACCAATCCTGGGGGAGGTGCAGGTCCTCACCAGCATCAACACCATCAACGCCAGCCGTACTCCTCTGGTCCCAGCATGCATCAGCACCACAACAACATGGGAGGAGGGAACAGGGGTCCACGCCCACTAGACCAGGTCACCTGCTACAAGtgTGGTGAGAAGGGCCACTATGCCAATAAATGCACCAAAGGACACCTGGCCTTCCTCAGTGGACAGTAACTCTCTCACAACCCCGTGGATGGACTCAGTTCAGCTGGAAGACAGCGGAGAGCAGAGCACAGCGTCTGTAGATTGAGATGCTAAGTCGTCAGGAACCCTGGACCTCTggacagacagacctgtttctagaacggacagacagacctgtttcTAGATCGGACCGACAGACCTGTTTCTAGATCGGACCGACAGACCTGTTTCTAgaacggacagacagacctgtttcTAGATcggacagacagacctgtttcTAGATAggacagacagacctgtttcTAGATcggacagacagacctgtttctagaacggacagacagacctgtttctagaacggacagacagacctgtttcTAGAACTGGCAGACAGACCTGTTTCTAGAACTGGCAGACAGACCTGTTTCTAGATcggacagacagacctgtttctagaacggacagacagacatgtttctagaacggacagacagacctgtttcTAGAACGGACAGACATACCTGTTTCTAgaacggacagacagacctgtttctagaacggacagacagacctgtttcTAGATcggacagacagacctgtttctagaacggacagacagacctgtttcTAGATCGGACAGTGCTTCTGACGCTTTGATCAAATCCTTCCGTTGGATTAACCTTTAACCCCGAGACACTTTTGGGACCCAAGCTGTGATTGGTACTTCTATCCATACAATTCTGTCAGATTGcttcagggagggtagaggaagtgTGTAACCTAGCCAACCGTGGTTTATCTGAAGCCTTGATTTGGGTTCATCCATGGACTCAAATGTTGTTTAACGATTCGACCCAGGTTTCGATCAACATATTGGAACGATATCCGATCTCCAGACCTTCTTCTTGTATGTGAGTGAAGAGACTAGTATACATTCTAACCCAGGGTCTGACCTGTTGTTCATCCTGAATACTCCATTTTACTGGCTTCAGACTCAACCTTCAATGAATTGAAATAGGACTCTTGAGCTGTGATGATGCTGTGTTGGATCCTTTCACAGCTTTTTCCccccggaggaggaggaggaggtggtggggaGATCTGGTCTGACCGATCTGTGTTGCCTTTTGTAGATTACACACAATTTCAGTATGTTATAGTTTTCTAAAAATACAATAAACCTGTTCAGGTCAGTCTCTTGTTCCTCCTGGTCTAGTCTGTAAAATACAATAAACCTGTTCCTCCTGGTCTGTAAAATACAATAAACCTGTTCCTCCTGGTCTAGTCTGTAAAATACAATAAACCTGTTCCTCCTGGTCTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677803 lncRNA downstream 2064 1021952 ~ 1024681 (-) True G2339050
TU2677904 lncRNA downstream 15062 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA downstream 16115 1010271 ~ 1010630 (-) True G2339123
TU2677894 lncRNA downstream 26888 997931 ~ 999857 (-) False G2339121
TU2677898 lncRNA downstream 26888 997931 ~ 999857 (-) False G2339121
TU2677931 lncRNA upstream 25102 1073281 ~ 1073949 (-) False G2339139
TU2677932 lncRNA upstream 25102 1073281 ~ 1073949 (-) False G2339139
TU2677933 lncRNA upstream 25102 1073281 ~ 1073949 (-) False G2339139
TU2677934 lncRNA upstream 25102 1073281 ~ 1073949 (-) False G2339139
TU2677935 lncRNA upstream 25102 1073281 ~ 1073949 (-) False G2339139
XM_036972330.1 mRNA downstream 23561 973741 ~ 1003184 (-) False LOC110513313
XM_036972321.1 mRNA downstream 68266 855362 ~ 958479 (-) False LOC110516334
XM_036972322.1 mRNA downstream 68266 860243 ~ 958479 (-) True LOC110516334
XM_036972319.1 mRNA downstream 68267 855362 ~ 958478 (-) False LOC110516334
XR_005041780.1 mRNA upstream 35793 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 109873 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 278489 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 278489 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 280719 1328898 ~ 1417783 (-) False LOC110516509
TU2677806 other downstream 23838 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 26888 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 57591 963149 ~ 969154 (-) True G2339060
TU2677876 other downstream 84853 940976 ~ 941892 (-) True G2339109
TU2677784 other downstream 182641 839183 ~ 844104 (-) False G2339043
TU2677965 other upstream 59553 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 110368 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 187025 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 193895 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 193895 1242074 ~ 1243213 (-) True G2339205

Expression Profile