RNA id: XM_036972300.1


Basic Information

Item Value
RNA id XM_036972300.1
length 5162
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110516509
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1326668 ~ 1417783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAATTTCCTGCTGCTAGGAGAACGGTAGTGTGAGTCGGATAGACAGGCAGAGAGCTGCAGCCCCACCGAACAGAATAGAAAGCACCGCTGCAAGCTGCATGGTAGGAAGGATCTTCGCCACATTGTTCCTCCGCATTTATTAAACCGCCCAGGAATCCACCGCTCCGGGAAACGACCCTCTCCGCTGCCCGGGACGCACGATGATGAAGTTTAGGTTCCGTCGGCAGGGCAacgacccacagagagagaaaattaaACAGGAATTGTTCGCCTTCAACAAGACCGTGGAACATGGGTTCCCCCACCAGCCCTGTGCGTTGGCCTTTGACCCCCAGCTGCAGCTCATGGCCATCGGGACCAAGTCTGGAGCCATCAAGATTTATGGATCTCCAGGGGTGGAGTTTACAGGACTACACAGAGACGCTGCAGCCGTAGCGCAGATACACTTCCTCCAAGGACAGGGCCGTCTGTTGTCGCTGCTTGATGACAACACGCTGCACCTGTGGGAGCTGGGCGGAGCTTCCCGGGACAGGGGAGGGGCTAAGAGCGAGGGTGTGGTCTACCTGGAAGAAAAACGCAACTACAGTCTCCTGGGACGACCTGGACTAGAGagctgcagTGCAAGCCGTGTGACAGTTCTGCTGTTGTTGAGTTCATGTGACCTGCTGTGTGTCGGCACCGAGGGAGGGGGCATACACTTCCTGGATCTGCCACGCCTCTCGTTGAGGGATAACCAATCACTCCTGCTGGATCAGGTGATGCAGAGCATACCTGAGGACTACAGGTGTGGGAAGTCTCTGGGACCGGTGGAGTCGTTACAGGAACACCCCAAGCAGCCAGGGAAGATTCTGATTGGCTACAGCAGAGGCCTGGTCGTCCTATGGGATCTCAGCACCCGCAACGCAGAACACATGTTCCTGGGAAAACAGcaGCTGGAGTCCCTGGTGTGGGAACGTTCCGGTAGCTCCTTCGTCAGTTCCCATAGCGACGGGGGGTACAGCGTGTGGGCTGTTGCCAGTGGTAACACGTACACACACCAGCCTGTGTCCTCGTCCATCCCCTATGGTCCATTCCCTTGTAAAGCCATCAACAAGATCTTATGGAGGACGATTCAGTCAGGGTGTCCAGTAGTCCTCTACAGTGGAGGAATGCCCAGGGCCAGTTATGGAGACCGTCACTGTGtgaccatccaacaggacaaacAACACGTCACTCTAGACTTCACATCCAGAGTTATAGACTTCTTCACCGTCCACACCACTGACCCGGagcacgACTATGATGATCCTAAAGCCCTCGTGGTGTTACTAGAGGAGGAGCTGGTTGTAATAGACCTCTTGACCACCGGGTggccctctgtccctcctccttaCCTGGCTCCGCTCCACTCCTCCGCCATCACCACATCCTGTCACCTGGACAACGTCCCCGCCAAGCTCTGGGACCGCCTGGCCGCCGCCGGGAACAACCAGGGCGCTCAGCCTGGAGTGAGACACGCACACGGGagttggCCGATATGTGGAGGAAAGAATCTAGCGCCCCCGCCCAGACAACAGGAGTTGCTGCTGAcggggcatgAGGACGGTACAGTGCGGTTCTGGAATGTGTCTGCTGTTGCCATGACTCCTCTCTACAAGCTCAGCACGGCTAACGTCTTCCATACCGACTGTGACCCTAACGACGACCCCCTGGACCCTACCAATGACCCCGAAGCACTGCAAGAGGAGGAGTGGCCTCCCTTCAGGAAGgtgggctGTTTTGATCCGTATAGTGATGATCCTCGTCTGGGGATCCAGAAGATCAGTCTGTGTAAATACAGCTGTAGACTGGTGGTGGCCGGGACCGCTGGacaggtgaTCGTACTGGGTCTGAGTGATGAATGGTCGGACCACACGGTCGATGTCTCCACGGTCGACCTGCTTCAGGACCGAGAGGGGTTCACCTGGAAGGGCCATGATAGGCTGGAGCCCCGAGCCAGCCCCGCCCCCTTCCCTCCAGGCTTCCAACCATTGGTCCTCGTGCAGGCCCTGCCCCCAGCCTCTGTTACCTCTGTGATGCTGCATGCGGAGTGGAACCTCGTAGCGTTCGGGACGAGTCACGGCTTCGGACTGTTTGACTACCACAGACGCACTGCTGTTctggccagGTGTACCCTGCACCCTAACGACTCCCTAGCGATGGAGGGTCCTCTCAGCAGAGTGAAGAGTCTGAAGAAGTCTCTCAGACAGAGCTTCAGACGCATCAGGAAGAGTAGAGTGTCTGGGAAGAAACGCCCCATCCCCACCCCTACcagcaagatccaGGAGGCCAACGCAGCGCTAGCTGACCAGGAGGAAGTAGCTCCGGTGCAGAGGAGGATCGAGCCGAGATCAGCTGACGACTCTCTATCAGGAGTGGTGCGATGCCTCTGTTTCGCTGATACGTACCTCAGAGACGGTACACACCACGGCCCGACGCTGTGGGCGGGGACAAACTCAGGGAGTGTGTATGCTTACGCGTTGGAGGTCCCGGGTGTGGGGACGGGCCGTGGGCGGCCGGGGGGTGAGGGGAGCGGCTGTGTGGAGGCCGTGTTGGGGAAAGAGATCCAGCTGATGCACAGGGCTCCGGTCGTGTCCGTCTGCGTGCTGGACGGACGGGGGAAACCGTTACCAGAACCTTACCAAGCCTCTCTGGACCTGGCTACTGCTCCAGACATGACTAACCCACACTCTGTCCTCATCGCTTCAGAGGAACAactcaagGTGTTCAGTCTTCCTAAGGTCGGTGCGAAGACCAAGTTCAAGCTGACGGCTCATGAGGGTTGTCGTGTGCGGAGGGTTGCCATGGTGACTGTGTGTTCCACGGCCCAGGAGGACTACAGTGAGACCAGTCTGGTCTGTCTGACCAACCTTGGAGACCTGCACTTGTTTAACGTACCTGCCCTACGGCCACaggtaCGTTATGACTGTATCCGTAAAGAGGACATCAGTGGCATCGCTTCCTGCGTCTTCACAAGGAACGGGcaggggttCTACCTGATCTCTCCATCAGAGTACCAGCGTTTCTCCCTGTCAGCTAAAGTCATCACAGAACCTCTATGTACTGTGGAGCTGGAGAGACCTCTGGAGACACACATCAGCGACGACGCAGCCATGCCTCTCCGGGCCAACGGAACTCACCGGAACCAGGCTGAAGGGTTAAACGAGGACCCCCAGTGTGGCCTCCCCTCCccgcctcccctctcccctctggacTCCCCCCTCAGCATGGCTGACATCAGCCTGGACACCACCGGAGAACTCACTGTAGAGGACGTCAGGGACTTCCTCACttccgTGGACGAGGTAGAGAATAACTTGAGGAACATCACAGAGGAGGACGGATGCTCTCTAGGAGTCCTGATCACCTGACCAGGTCTGCTGTGTTGTGGGAGGATCTGGACTACAGACAGACATCATGGGATGCtacctgccactcctcctcctctccatcacgGCCTTCCAGTCCTGGGGTTGTTGGACTGACCATGTGACCACTTCGGCTACTGAGGAAAGGACTGAAGAACGTCATGATGAACTGTTAtctaaccactaacacactacaCCTAGTCAACACGTTGGGATGGAcctcctcttcatccctcctctatccctttatccctccatccctcctctatccctacttcatctatccctccctccatctctcatccctacAACTGTGAACTTAATGTTGAGTAGAGAGATGCCTAACACAGTGAAGTAAACAATATTACCTTTCCCCAGTATtacatgttattaacatgaaggAACTAACCACCAAGGCTTTTCTATTGATGATGTTGCTATAGATACACTATGTTTTCTATACGTCTGATAAATGCTATTTTATATTCTAGGTAGTCTGGAGCGCTAAGCTCACGGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGTTAACTGCTACCTGTCAAGAGCTGTCTAGAGCCAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGCTACCTGTCAAGAGCTGTCTAGAGCCAACTGTCTGTCTAGAGCTAACAGTTAGCTAACTGTCTGTCTAGGGCTAACGGTTAGCTAACTGCTACCTGTCAAGAGCTGTCTAGAGCCAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGTTAACTGCTACCTGTCAAGGGCTAACGATTAGCTAACTGCTACCTGTCAAGGGCTAACGGTTAGCTAACTGCTACCTGTCTGTCTAGAACTAACGGTTGGCTAAATGCTATCTGTCAAGAGCTAACGGTTAGTTAACTGTCTGTCTAGAGCTAACGGTTAGTTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCGGCTAAATGCTATCTGTCAAGAGCGCTAACTGAATTGTTTTAATAATGGAAGGAATTCAGGCCAGCAGAATCTCAATAGTCTGAAGATGCTTCCTCTcgtctcctcacctctccttcgtCTGCGCAGGAAAACGATATAAAGAATATATGATGAGGGAATTCGGTTTCAGGTGACCAGGTCTTTCAGATCAGAAGGAGGAGAAGACGAGCTACTTTAGACTGTTGGGACGCTGTCTGGGTGAAGCAGTGTGTTCTGGGTAACAGAGGAGGACCCTATCACAAGTCAACAATTATTTTAACctttttaaaaaacttttacAGTGTAAAATATCTTTAGGTTGGGACCCAGAGGAGACGAGACGGGTTCTACCAAACGATCAGAGAACGTAGAACCTGTCACCATAGTTAACGCTAAGCAGTATAATGTGGTTGGGTCAGGGGACCTCTGTGTTAAAGGGACCTCATTAAGGACTgtagcagagcagagaggagggtcTGTCTCCGCCTGCCTCACTCACTAACCACTCGTAGCCATGGGAACCAGGACCAGAGTCTCTGTTTCCTGTAGAGTTCTGATCCTCTAGTGGTGCTGAAGGAGAATGTTAATAAAGTATTTACTCCtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678064 lncRNA downstream 12211 1313967 ~ 1314457 (-) True G2339209
TU2678082 lncRNA downstream 53850 1272160 ~ 1272818 (-) False G2339223
TU2678083 lncRNA downstream 53850 1272160 ~ 1272818 (-) True G2339223
TU2678061 lncRNA downstream 54984 1254434 ~ 1271684 (-) True G2339208
TU2678140 lncRNA upstream 607 1418389 ~ 1421502 (-) True G2339258
TU2678146 lncRNA upstream 4889 1422671 ~ 1422910 (-) True G2339263
TU2678158 lncRNA upstream 9349 1427131 ~ 1427820 (-) True G2339267
TU2678159 lncRNA upstream 12509 1430291 ~ 1430571 (-) True G2339268
TU2678205 lncRNA upstream 32715 1450497 ~ 1451872 (-) True G2339288
XM_036972337.1 mRNA downstream 143251 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 241885 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 278489 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 323484 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 368189 860243 ~ 958479 (-) True LOC110516334
XM_036972341.1 mRNA upstream 18717 1436499 ~ 1488403 (-) False LOC118947127
TU2678053 other downstream 83286 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 83455 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 91080 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 167097 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 204029 1107732 ~ 1122639 (-) True G2339156
TU2678190 other upstream 27179 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 31756 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 32018 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile