RNA id: TU2678076


Basic Information

Item Value
RNA id TU2678076
length 1628
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC110516509
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1326668 ~ 1417783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACACCACCGGAGAACTCACTGTAGAGGACGTCAGGGACTTCCTCACttccgTGGACGAGGTAGAGAATAACTTGAGGAACATCACAGAGGAGGACGGATGCTCTCTAGGAGTCCTGATCACCTGACCAGGTCTGCTGTGTTGTGGGAGGATCTGGACTACAGACAGACATCATGGGATGCtacctgccactcctcctcctctccatcacgGCCTTCCAGTCCTGGGGTTGTTGGACTGACCATGTGACCACTTCGGCTACTGAGGAAAGGACTGAAGAACGTCATGATGAACTGTTAtctaaccactaacacactacaCCTAGTCAACACGTTGGGATGGAcctcctcttcatccctcctctatccctttatccctccatccctcctctatccctacttcatctatccctccctccatctctcatccctacAACTGTGAACTTAATGTTGAGTAGAGAGATGCCTAACACAGTGAAGTAAACAATATTACCTTTCCCCAGTATtacatgttattaacatgaaggAACTAACCACCAAGGCTTTTCTATTGATGATGTTGCTATAGATACACTATGTTTTCTATACGTCTGATAAATGCTATTTTATATTCTAGGTAGTCTGGAGCGCTAAGCTCACGGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGTTAACTGCTACCTGTCAAGGGCTAACGATTAGCTAACTGCTACCTGTCAAGGGCTAACGGTTAGCTAACTGCTACCTGTCTGTCTAGAACTAACGGTTGGCTAAATGCTATCTGTCAAGAGCTAACGGTTAGTTAACTGTCTGTCTAGAGCTAACGGTTAGTTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCTGTCTAGAGCTAACGGTTAGCTAACTGTCGGCTAAATGCTATCTGTCAAGAGCGCTAACTGAATTGTTTTAATAATGGAAGGAATTCAGGCCAGCAGAATCTCAATAGTCTGAAGATGCTTCCTCTcgtctcctcacctctccttcgtCTGCGCAGGAAAACGATATAAAGAATATATGATGAGGGAATTCGGTTTCAGGTGACCAGGTCTTTCAGATCAGAAGGAGGAGAAGACGAGCTACTTTAGACTGTTGGGACGCTGTCTGGGTGAAGCAGTGTGTTCTGGGTAACAGAGGAGGACCCTATCACAAGTCAACAATTATTTTAACctttttaaaaaacttttacAGTGTAAAATATCTTTAGGTTGGGACCCAGAGGAGACGAGACGGGTTCTACCAAACGATCAGAGAACGTAGAACCTGTCACCATAGTTAACGCTAAGCAGTATAATGTGGTTGGGTCAGGGGACCTCTGTGTTAAAGGGACCTCATTAAGGACTgtagcagagcagagaggagggtcTGTCTCCGCCTGCCTCACTCACTAACCACTCGTAGCCATGGGAACCAGGACCAGAGTCTCTGTTTCCTGTAGAGTTCTGATCCTCTAGTGGTGCTGAAGGAGAATGTTAATAAAGTATTTACTCC

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678064 lncRNA downstream 12215 1313967 ~ 1314457 (-) True G2339209
TU2678082 lncRNA downstream 53854 1272160 ~ 1272818 (-) False G2339223
TU2678083 lncRNA downstream 53854 1272160 ~ 1272818 (-) True G2339223
TU2678061 lncRNA downstream 54988 1254434 ~ 1271684 (-) True G2339208
TU2678097 lncRNA upstream 9527 1342857 ~ 1343631 (-) True G2339233
TU2678101 lncRNA upstream 23223 1356553 ~ 1357779 (-) True G2339237
TU2678103 lncRNA upstream 25664 1358994 ~ 1359370 (-) True G2339238
TU2678104 lncRNA upstream 27596 1360926 ~ 1361893 (-) True G2339239
TU2678111 lncRNA upstream 48637 1381967 ~ 1382952 (-) True G2339243
XM_036972337.1 mRNA downstream 143255 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 241889 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 278493 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 323488 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 368193 860243 ~ 958479 (-) True LOC110516334
XM_036972341.1 mRNA upstream 103169 1436499 ~ 1488403 (-) False LOC118947127
TU2678053 other downstream 83290 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 83459 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 91084 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 167101 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 204033 1107732 ~ 1122639 (-) True G2339156
TU2678190 other upstream 111631 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 116208 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 116470 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile