RNA id: XM_036972341.1


Basic Information

Item Value
RNA id XM_036972341.1
length 3249
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC118947127
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1436499 ~ 1488403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cCAGACTGAAGAAGCTCCAGAGAGCCCTTACCAGGCCAGCCTGAACCCCGCCCAGCACCACCCCTCCTCCAGGAAACACACTGCTACACGAGTAGCCCCTTCTGATGACATGGTGCGGTCCAGGGCCCCCCCTCCTGATGACTTGGTGCGGTCCAGGGCCCCCCCTCCAGAAGGAGTGGTCCAGTCTGATGCGTCTAACTCAGAAAGCCCTTCCCACAACATCAAGGACATGATCAGACAGTACCAACACCCATCTAACCCTGCACCCAGccagcctgcacacacacacaggaggggggaggggaagaTGTTTACAAAGAAGCCGGACCCTCATGATGAAGCCATGTATATCCTGAAAGACCAGATGGCCAACCCAccaccacagaagTCTTTCGCTCCGGCGACGCCTCGGGAACCAAAAGAGGAGGGTGGATCCAAAGTAACCAAGGCAACAAAACCCGGCCCACCTGCCCTAGCCGACTCCCACAGcagccccctccccccaccaGtgtcCAGAGAGTTGCCTGTAGAGGAAGAGACCAGCCAGACCCAGCTACACCACAGGAGCAGTGAAGAGCACTACACTTACACTAACACACCCTGGAGGATTTACCTGAGGAAAGaggtgttctacCCTAAAGACAACTTCAACACTCCTCTGTTGCTGGAGCTGCTGTTCAGACAGATAGTCCACGACACCTTCTCAGAGGCCTGCATCCGCATCACTCAGGAGGAGAGGACCAAGATGAAGGCTCTGTTTGtggagcACCAGGTGGGTCAGGATGGAGCCACACAGGATGAGAGTGTGAAGAAGAAGATCGTGACGATGGCTAGAGACTCCTGGGAAATATATTTCTCACGACTCTTCCCTGCCTCGggcagTGTGGGTACTGGGGTGCAGGTGGTCTCTGTGTCTCATCGAGGCATCAAGCTGCTGAAGATGGTGAGAAGCAGCGCTGTTGTCCCAGACTACTTCAGAGTGCTACAcccttacagTTACGCGGACATCCTGTTTGTGTCCATTCCATCTAAGAACATGTTGGAGTTTAACCTGACCAACGAGAAGCTGATTCTGTTCTCCGCCAAGGCTCCACAGGTTAAACACATGGTGGACTACTTCATCACAGAACTGAAGAAGGACTCTGAGTATGTGGTCGCAGTGAGGAACTACATCACAGAGGACAGAACTCTGCTCAGCTTCCACAAGGGAGACATCATCAGATTACACAGCGTGGAGGGGCTGGAGGAGGgctggcGGTACGGGGCGGTGTATGGACGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAagctcAGTGGGGAGTATGGTCTGATGAAAGATGAAGCTTACTGCCAGGTGATGAAACAGGTCACAGGAAACACCAGCTCCAAAACggACAGTTGTCAGAGAGGCTGGAGGCTACTCTACATCCTGACTGCGTTCCATCGCTGTTCTGAGGTCCTGAAGCCCTTCCTTTTAACGTTCCTGCTGGACGCCTGCTCTGGTCCTGGAGTCCACTACCAAGGTATAGCCAAGGCGTGTGAGCAGAACCTGAGGAGGACCTTCCAGTACGGAGGAAGAATCGAACACCCCAACAGCATGGAGCTAAAGGCCATGCTgGCTGGGCGGAGCTCCAAGAGACAGTTGTTCCTCCTACCAGGCGGCATCGAGAGACACCTTAAAATCAAGACCTGCtcagtgtctcTGGATGCTATAGAGGAGCTATGTAATGACATGGGACTGCACAGACTGGAGGCCATGGATGAGTACGCTGTATTTGTGGTCACACACCGAGGTCAGAATGTCCGTCCCCTCAATAAGAGGGAGTACATCCTGGACATTACTACGGAAGCGGAGCCAGTGGACAGTAACTACAGCCTGTGGTTCAGGAGGGTCATCTGGACACAGCCGCTTAAATTTGACAACGAGCTCTGTGTCACCATGCATTATAACCAGGTGTTACCAGACTATCTGAAGGCCTTGCTGAGTGTGGTTCCTCAGAGTAAAGCCAGTGAGCAGCAGCTGCAGCAGTTGGCCAAGCTGGCAGCATTACAACACCGTGCTAAAGATACCGTCTTCCTGCCCACCATtgGTGAGGTCCAGGAGTATGTCCCCCCCCAGCTCTACATCAGACAGCCTCCTCAGCCCTGGCTCAACATGGTCACTCAGCATATGCAGCAGGTCTCTCCTCTGAGTCCTCACCAGGCCAGGGCTCAGTTCCTCGGTCTGGTCAGTGCGTTCCCCATGTTTGGTTCCTCCTTCTTCTACATCCAGTCCAGCAGCAACATCTCCATCCTGGCTCCCTGTGTGTTGGCTGTCAACCAGAACGGACTGCACTTCCTACACAAGGACTCACATgaggcCACGGCGCGTTACCCTCTGAATGAGATCCAGTCCACCAGAACCCAGAGACCAACAGGAGGCTCCAGCTCCTCCTATCCCTACATAGACATTCTGCTGGGAGACCTGCTGACACAGCGAATCACACAGCTGCAGCTAGAacagGGTCTGGAGCTGTGTCGGGTCATTGCCATGCACATGGAAAACATGCTGTCTGTCCGGGAGAAGAGACTCACCCTGCCACCGAGTGAGATCACTCTgttataacacactgtctgtctgtctgtctgtctgtctgtctgtctgtctgccagtcagtcagtcagtcagtcagtcagtcagacagtccgGGAGAAGAGACGTTAGAAGATGGTAGATGGTGGTAGATAGtggtagatggtggtagttagtggtggatggtggtagatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678159 lncRNA downstream 5928 1430291 ~ 1430571 (-) True G2339268
TU2678158 lncRNA downstream 8679 1427131 ~ 1427820 (-) True G2339267
TU2678146 lncRNA downstream 13589 1422671 ~ 1422910 (-) True G2339263
TU2678140 lncRNA downstream 14997 1418389 ~ 1421502 (-) True G2339258
TU2678128 lncRNA downstream 29843 1403902 ~ 1406656 (-) False G2339253
XM_036972301.1 mRNA downstream 18716 1328898 ~ 1417783 (-) False LOC110516509
XM_036972300.1 mRNA downstream 18717 1326668 ~ 1417782 (-) False LOC110516509
XM_036972302.1 mRNA downstream 19266 1326668 ~ 1417233 (-) False LOC110516509
XM_036972337.1 mRNA downstream 253082 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 351716 1083972 ~ 1084783 (-) False LOC118947123
TU2678053 other downstream 193117 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 193286 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 200911 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 276928 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 313860 1107732 ~ 1122639 (-) True G2339156

Expression Profile