RNA id: TU2678199


Basic Information

Item Value
RNA id TU2678199
length 529
RNA type TUCP
GC content 0.56
exon number 4
gene id LOC118947127
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1436499 ~ 1488403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAaggtactcactcactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678159 lncRNA downstream 19229 1430291 ~ 1430571 (-) True G2339268
TU2678158 lncRNA downstream 21980 1427131 ~ 1427820 (-) True G2339267
TU2678146 lncRNA downstream 26890 1422671 ~ 1422910 (-) True G2339263
TU2678140 lncRNA downstream 28298 1418389 ~ 1421502 (-) True G2339258
TU2678130 lncRNA downstream 43144 1405810 ~ 1406656 (-) True G2339253
TU2678208 lncRNA upstream 11183 1465454 ~ 1466490 (-) False G2339291
TU2678209 lncRNA upstream 11183 1465454 ~ 1466490 (-) False G2339291
TU2678210 lncRNA upstream 11183 1465454 ~ 1466490 (-) False G2339291
TU2678211 lncRNA upstream 11183 1465454 ~ 1466490 (-) False G2339291
TU2678212 lncRNA upstream 11183 1465454 ~ 1466490 (-) True G2339291
XM_036972301.1 mRNA downstream 32017 1328898 ~ 1417783 (-) False LOC110516509
XM_036972300.1 mRNA downstream 32018 1326668 ~ 1417782 (-) False LOC110516509
XM_036972302.1 mRNA downstream 32567 1326668 ~ 1417233 (-) False LOC110516509
XM_036972337.1 mRNA downstream 266383 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 365017 1083972 ~ 1084783 (-) False LOC118947123
TU2678053 other downstream 206418 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 206587 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 214212 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 290229 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 327161 1107732 ~ 1122639 (-) True G2339156

Expression Profile