RNA id: TU2677136


Basic Information

Item Value
RNA id TU2677136
length 245
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2338614
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 174534 ~ 174778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattatatattatctacctcacttgctttggcaatgttaacacatgtttcccatgacaataaagcccttgaattgaattgaattgagagacagagggagagagacaaagagagagagagagagacaaagagagagagagagagagacagagagagagagaaagagacagagagacagagagagagagaaagagacagagagacagagagagagagagacagagagagacagagagacagagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677115 lncRNA downstream 480 173019 ~ 174054 (-) True G2338596
TU2677133 lncRNA downstream 10991 163255 ~ 163543 (-) True G2338612
TU2677132 lncRNA downstream 34740 139247 ~ 139794 (-) True G2338611
TU2677122 lncRNA downstream 71772 101414 ~ 102762 (-) True G2338601
TU2677101 lncRNA downstream 117157 56688 ~ 57377 (-) True G2338586
TU2677138 lncRNA upstream 3416 178194 ~ 178476 (-) True G2338616
TU2677139 lncRNA upstream 12423 187201 ~ 187430 (-) True G2338617
TU2677141 lncRNA upstream 14274 189052 ~ 189388 (-) True G2338619
TU2677144 lncRNA upstream 19550 194328 ~ 195554 (-) True G2338621
TU2677147 lncRNA upstream 27435 202213 ~ 203024 (-) True G2338622
XM_036972331.1 mRNA downstream 56445 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 126234 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 126247 47623 ~ 48287 (-) False LOC118947117
XM_036972342.1 mRNA upstream 72573 247351 ~ 293320 (-) True prpsap2
XM_036972304.1 mRNA upstream 271722 446500 ~ 512457 (-) False LOC110511701
XM_036972303.1 mRNA upstream 271722 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA upstream 284919 459697 ~ 512472 (-) False LOC110511701
XM_036972314.1 mRNA upstream 605988 780766 ~ 808870 (-) True LOC110517482
TU2677097 other downstream 119172 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 123081 47623 ~ 51453 (-) False LOC118947117
TU2677107 other upstream 9599 184377 ~ 186655 (-) True G2338590
TU2677207 other upstream 203401 378179 ~ 378883 (-) True G2338672
TU2677193 other upstream 287754 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 395049 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 488759 663537 ~ 666097 (-) True G2338752

Expression Profile