RNA id: TU2677152


Basic Information

Item Value
RNA id TU2677152
length 277
lncRNA type intronic
GC content 0.52
exon number 1
gene id G2338627
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 211300 ~ 211576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggtatgtctgtctgtctgtctgtctgttctgtgggtgtgacccggtgtctgtctgtctgtctgtctgtctgtctgtctgttctgtgggtgtgacccggtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgttctgtgggTGTGACCCAACTGCCAGATAACATATGGAAAGTAGCACACAGCCATAACACTGGGGCTCTATGAAatactctccctctgtctgtctgtctgcctgtctgtctgcctgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677150 lncRNA downstream 637 207628 ~ 210663 (-) True G2338625
TU2677149 lncRNA downstream 5733 205338 ~ 205567 (-) True G2338624
TU2677147 lncRNA downstream 8276 202213 ~ 203024 (-) True G2338622
TU2677144 lncRNA downstream 15746 194328 ~ 195554 (-) True G2338621
TU2677141 lncRNA downstream 21912 189052 ~ 189388 (-) True G2338619
TU2677155 lncRNA upstream 1877 213453 ~ 214140 (-) True G2338630
TU2677154 lncRNA upstream 2767 214343 ~ 214684 (-) True G2338629
TU2677157 lncRNA upstream 15370 226946 ~ 227145 (-) True G2338632
TU2677116 lncRNA upstream 30540 242116 ~ 242421 (-) True G2338597
TU2677198 lncRNA upstream 149995 361571 ~ 361823 (-) True G2338663
XM_036972331.1 mRNA downstream 93211 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 163000 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 163013 47623 ~ 48287 (-) False LOC118947117
XM_036972342.1 mRNA upstream 35775 247351 ~ 293320 (-) True prpsap2
XM_036972304.1 mRNA upstream 234924 446500 ~ 512457 (-) False LOC110511701
XM_036972303.1 mRNA upstream 234924 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA upstream 248121 459697 ~ 512472 (-) False LOC110511701
XM_036972314.1 mRNA upstream 569190 780766 ~ 808870 (-) True LOC110517482
TU2677107 other downstream 24645 184377 ~ 186655 (-) True G2338590
TU2677097 other downstream 155938 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 159847 47623 ~ 51453 (-) False LOC118947117
TU2677207 other upstream 166603 378179 ~ 378883 (-) True G2338672
TU2677193 other upstream 250956 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 358251 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 451961 663537 ~ 666097 (-) True G2338752
TU2677315 other upstream 452652 664228 ~ 664685 (-) True G2338753

Expression Profile