RNA id: TU2677116


Basic Information

Item Value
RNA id TU2677116
length 306
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2338597
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 242116 ~ 242421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaataaaaaaaaaataaaaactccccttttttctactgtgttattgacttgttaattgtttactccatgtgttgtctgttcacactgctatgccttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaataaaaaaaataaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677157 lncRNA downstream 14971 226946 ~ 227145 (-) True G2338632
TU2677154 lncRNA downstream 27432 214343 ~ 214684 (-) True G2338629
TU2677155 lncRNA downstream 27976 213453 ~ 214140 (-) True G2338630
TU2677152 lncRNA downstream 30540 211300 ~ 211576 (-) True G2338627
TU2677150 lncRNA downstream 31453 207628 ~ 210663 (-) True G2338625
TU2677198 lncRNA upstream 119150 361571 ~ 361823 (-) True G2338663
TU2677199 lncRNA upstream 119463 361884 ~ 362185 (-) True G2338664
TU2677203 lncRNA upstream 130154 372575 ~ 372872 (-) True G2338668
TU2677204 lncRNA upstream 133230 375651 ~ 375942 (-) True G2338669
TU2677206 lncRNA upstream 135296 377717 ~ 377946 (-) True G2338671
XM_036972331.1 mRNA downstream 124027 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 193816 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 193829 47623 ~ 48287 (-) False LOC118947117
XM_036972342.1 mRNA upstream 4930 247351 ~ 293320 (-) True prpsap2
XM_036972304.1 mRNA upstream 204079 446500 ~ 512457 (-) False LOC110511701
XM_036972303.1 mRNA upstream 204079 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA upstream 217276 459697 ~ 512472 (-) False LOC110511701
XM_036972314.1 mRNA upstream 538345 780766 ~ 808870 (-) True LOC110517482
TU2677107 other downstream 55461 184377 ~ 186655 (-) True G2338590
TU2677097 other downstream 186754 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 190663 47623 ~ 51453 (-) False LOC118947117
TU2677207 other upstream 135758 378179 ~ 378883 (-) True G2338672
TU2677193 other upstream 220111 462532 ~ 479061 (-) True LOC110511701
TU2677280 other upstream 327406 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 421116 663537 ~ 666097 (-) True G2338752
TU2677315 other upstream 421807 664228 ~ 664685 (-) True G2338753

Expression Profile