RNA id: TU2677252



Basic Information


Item Value
RNA id TU2677252
length 286
lncRNA type intronic
GC content 0.47
exon number 2
gene id G2338701
representative True

Chromosome Information


Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 475868 ~ 476688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAGGAGAGCTCCCTCATTCTACCCACACTGCCTCTCTGGTTGTCAGGAGAGCTCCCTCTCATTCTACCCACACTGCCTCTCTGCCAGGCAGGTACAGAGTGGACTGATTAGGCGCCGCCGAACGTCTCATCGATAGCTAAAATGCCGTGCAAATGTAGATTCCAGCCTGCCTGGATGGGTTTACACCAGACCCAACCAGGGACGTAGTGGAAACGAACAAACGATTTTTATTCAACTTTTTATTTAGATAATTATCTTTTACTCACTTATTATTGCATTTATCAC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2677250 lncRNA downstream 7846 467663 ~ 468022 (-) True G2338699
TU2677186 lncRNA downstream 25339 446215 ~ 450529 (-) False LOC110511701
TU2677187 lncRNA downstream 25339 446215 ~ 450529 (-) False LOC110511701
TU2677239 lncRNA downstream 34568 441063 ~ 441300 (-) True G2338696
TU2677228 lncRNA downstream 52118 423386 ~ 423750 (-) True G2338689
TU2677256 lncRNA upstream 17414 494102 ~ 494927 (-) True G2338705
TU2677258 lncRNA upstream 30367 507055 ~ 507470 (-) True G2338706
TU2677259 lncRNA upstream 31661 508349 ~ 508769 (-) True G2338707
TU2677283 lncRNA upstream 98143 574831 ~ 575040 (-) True G2338728
TU2677284 lncRNA upstream 98712 575400 ~ 575741 (-) True G2338729
XM_036972342.1 mRNA downstream 182548 247351 ~ 293320 (-) True prpsap2
XM_036972331.1 mRNA downstream 357779 53145 ~ 118089 (-) False LOC110511686
XR_005041773.1 mRNA downstream 427568 47623 ~ 48300 (-) False LOC118947117
XR_005041772.1 mRNA downstream 427581 47623 ~ 48287 (-) False LOC118947117
XM_036972314.1 mRNA upstream 304078 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA upstream 322475 799163 ~ 800016 (-) True LOC118947119
XM_036972318.1 mRNA upstream 378674 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 378674 855362 ~ 958476 (-) False LOC110516334
XM_036972324.1 mRNA upstream 378674 855362 ~ 958476 (-) False LOC110516334
TU2677207 other downstream 96985 378179 ~ 378883 (-) True G2338672
TU2677107 other downstream 289213 184377 ~ 186655 (-) True G2338590
TU2677097 other downstream 420506 52434 ~ 55362 (-) True LOC110511686
TU2677092 other downstream 424415 47623 ~ 51453 (-) False LOC118947117
TU2677280 other upstream 93139 569827 ~ 570378 (-) True G2338725
TU2677314 other upstream 186849 663537 ~ 666097 (-) True G2338752
TU2677315 other upstream 187540 664228 ~ 664685 (-) True G2338753
TU2677748 other upstream 215817 692505 ~ 695852 (-) False G2339019
TU2677784 other upstream 362495 839183 ~ 844104 (-) False G2339043

Expression Profile