RNA id: TU2677326


Basic Information

Item Value
RNA id TU2677326
length 292
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G2338763
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 677724 ~ 678181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGATGGAGGGTTTATATCCATTGACAGTGTCAAGGTTCATTACATAAGAAAGGGTTTTAAGACCCTACGAGGATGGTGATAGAGGATGAAGGGTTTATATCCATTGACAGTGTCAAGGTTCATTACATAAGGGTTTTAAGACCCTACGAGGATGGTGATAGAGGATGGAGGGTTTATATCCATTGACAGTGTCAAGGTTCATTACATAAGAAAGGGTTTTAAGACCCTACGAGGATGGTGATAGAGGATGGAGGGTTTATATCCATTGACTGTGTCAAGGTTCATTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677323 lncRNA upstream 1167 676325 ~ 676557 (+) True G2338761
TU2677317 lncRNA upstream 8619 668860 ~ 669105 (+) True G2338755
TU2677305 lncRNA upstream 65755 611466 ~ 611969 (+) True G2338743
TU2677298 lncRNA upstream 68255 609097 ~ 609469 (+) True G2338741
TU2677296 lncRNA upstream 96586 580893 ~ 581138 (+) True G2338740
TU2677347 lncRNA downstream 28368 706549 ~ 706890 (+) True G2338772
TU2677348 lncRNA downstream 28809 706990 ~ 707310 (+) True G2338773
TU2677349 lncRNA downstream 30270 708451 ~ 708714 (+) True G2338774
TU2677350 lncRNA downstream 31610 709791 ~ 710034 (+) True G2338775
TU2677352 lncRNA downstream 44224 722405 ~ 723638 (+) True G2338777
XM_036972338.1 mRNA upstream 129296 529985 ~ 548428 (+) False LOC118947125
XM_036972310.1 mRNA upstream 240598 301775 ~ 437126 (+) False LOC110516853
XM_036972339.1 mRNA downstream 1272 679453 ~ 693043 (+) False LOC118947126
XM_036972340.1 mRNA downstream 1297 679478 ~ 693043 (+) False LOC118947126
XM_036972307.1 mRNA downstream 25302 703483 ~ 754195 (+) False LOC110511299
XM_036972306.1 mRNA downstream 25306 703487 ~ 758282 (+) False LOC110511299
XM_036972332.1 mRNA downstream 160965 839146 ~ 843678 (+) True LOC110517977
TU2677034 other upstream 125202 529989 ~ 552522 (+) True LOC118947125
TU2677011 other upstream 129560 529989 ~ 548164 (+) False LOC118947125
TU2676946 other upstream 240603 432797 ~ 437121 (+) True LOC110516853
TU2676947 other upstream 331106 302076 ~ 346618 (+) False LOC110516853
TU2676927 other upstream 471496 205182 ~ 206228 (+) True G2338488
TU2677337 other downstream 1285 679466 ~ 692636 (+) False LOC118947126
TU2677333 other downstream 3227 681408 ~ 692636 (+) False LOC118947126
TU2677336 other downstream 5998 684179 ~ 692636 (+) True LOC118947126
TU2677345 other downstream 36399 714580 ~ 758055 (+) False LOC110511299
TU2677344 other downstream 52048 730229 ~ 758055 (+) True LOC110511299

Expression Profile