RNA id: TU2677846


Basic Information

Item Value
RNA id TU2677846
length 547
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2339086
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 819209 ~ 822984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggctctacaggctagggctatactagggctatactagggctctacaggctagggctatactagggctatactagggctatacaggctagggctatactagggctatactagggctctacaggctagggctatactagggctatactagggctatactagggctctacaggctagggctatactagggctatactagggctatactagggctatacaggctagggctatactagggctatactagggctatacaggctagggctatactagggatatacaggctagggctatactagggctagggctatactagggctctacaggccaCTAAccaagtcaactacccacaactaaggtggcaaaacaggctgcctaagtatggttctgtatcagagacaacgatagacagctgtccctgattgagaaccataccctgcCAAAACAAAGACAACATCCCACACAGAAAGGAggggaaaagggctgcctaagtatggttctgtatcagagacaacgatagacagctgtccctgattgagaaccataccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677816 lncRNA downstream 3655 814084 ~ 815554 (-) True G2339063
TU2677837 lncRNA downstream 29942 788494 ~ 789267 (-) True G2339078
TU2677834 lncRNA downstream 54586 763828 ~ 764623 (-) True G2339075
TU2677828 lncRNA downstream 59448 757915 ~ 759761 (-) False G2339072
TU2677782 lncRNA upstream 16199 839183 ~ 844104 (-) False G2339043
TU2677786 lncRNA upstream 16199 839183 ~ 844104 (-) False G2339043
TU2677787 lncRNA upstream 16199 839183 ~ 844104 (-) False G2339043
TU2677789 lncRNA upstream 16199 839183 ~ 844104 (-) False G2339043
TU2677791 lncRNA upstream 16199 839183 ~ 844104 (-) False G2339043
XM_036972314.1 mRNA downstream 10339 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA downstream 19193 799163 ~ 800016 (-) True LOC118947119
XM_036972303.1 mRNA downstream 306737 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 306737 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 306752 446500 ~ 512457 (-) False LOC110511701
XM_036972318.1 mRNA upstream 32378 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 32378 855362 ~ 958476 (-) False LOC110516334
XM_036972324.1 mRNA upstream 32378 855362 ~ 958476 (-) False LOC110516334
XM_036972317.1 mRNA upstream 32378 855362 ~ 958478 (-) False LOC110516334
XM_036972319.1 mRNA upstream 32378 855362 ~ 958478 (-) False LOC110516334
TU2677748 other downstream 123357 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 153112 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 154524 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 248831 569827 ~ 570378 (-) True G2338725
TU2677193 other downstream 340148 462532 ~ 479061 (-) True LOC110511701
TU2677784 other upstream 16199 839183 ~ 844104 (-) False G2339043
TU2677876 other upstream 117992 940976 ~ 941892 (-) True G2339109
TU2677813 other upstream 140165 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 174947 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 178035 1001019 ~ 1002907 (-) True LOC110513313

Expression Profile