RNA id: TU2677786


Basic Information

Item Value
RNA id TU2677786
length 4160
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G2339043
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 839183 ~ 844104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGTCGGAACACATGTGCACTTTTATTGGGAGTTTAGTCAGTGTAcaagttgccccccccccccccccccccactggtcCCTCTGGCACCCTAATCACCTCTGACCCCCCCCAGCAGAGGTCACACTCGGGTTCATTTGCATAAACAAAAACCAAAAAAAATGAACAGGACCAAGACTTAAGGCTGCAAGTACAAAAAAACCCAGACATTGTGACATAATTTACATACAAGCCATACTGCCCCATGTTACAGAACGCTGTGGCAGAGAGCCGGAAGCCGGCAGCCTTCACAGAGGCAAATACCTGTTCTGAAAAGTTAACAAAACAATTGGAATGACTCGAAAAAGAAACAGAATgtacatgttgttgtttttaaagtCCTCAGCTGCATGATAGAATCTCAGGGGTCCTTTTAcattatttcttttttttaactcTTAAAAATCTTTAATCCGCTGTTTCACCGTTCcagttgtgtttattttttttgtttttcacagATCCTGAGTCAAAAAAAGCGCCAAAATAACAGAAGCCATGCCAATGAGACTGAGAAGCTGGGTTTGGGCTCACTCCAcaggcccccctctctctccctctgggtgGTGTGTCTGGTGGCAGAGCTGAAGTGGTAGTCGGGTGTGGCTGGGTCGGTCGTTTGGGATGGGTACAGTCTGTTTAGAAGCATTTACGGTGGACGATGGAGGGACCAGACTCGTCGTACTCCTGCTTGCTGATCCACATCTGTtggaaggtggagagagaagCCAAGATGGAGCCTCCGATCCAGACGGAGTATTTACGCTCTGGGGGGGCGAtgatctggagaggagagagaggagggttaaaTTAACATGGGTTAAGACTGCAGTACTAACATCTGACCACACGGTGGCAGCAGAGAGTTAAAGGTAAGGGACAGGACTTCAGATCAGTCTACTGGATACTAAGTTATGCATTGTGTTGCTTTTTGAAGGTCTGAAGCAGTTGATTTTTAATGTGTTAAACTAATGTAATAACTGTGTATTAGTATCTTTATAGGGGACTGTTAGCTAAGCCTAATAGTAGTGAGAACCAGTGTACTGGTGTTGCCAGGCCATCCGATTAGATGACTGGTATTTAGTCCTAGTTGGTAGTGCTTGTGTAGCCTTCATAAAGGGACAGACAGTTGACTGTAGTGATTCTAACCTTGATCTTCATGGTGGAGGGGGCCAGAGAGGTGATCTCCTTCTGCATCCTGTCAGCGATGCCGGGGTACATGGTGGTTCCTCCGGACAGCACTGTGTTGGCGTACAGGTCCTTACGGATGTCCACGTCACACTTCATGATGGAGTTGTAGGTGGTCTCGTGGATACCGCAAGACTCcatacctggagagagagagaggagacaaaatGGCCGTCATTACGGCGCTCACAAGACTGCTGCCGACGACCCGTCTGACCTCGAGCGACTGTTCTGAGTGTTTAGTTCAAACTCACCGAGGAAGGAGGGCTGGAAGAGGGCCTCTGGGCAGCGGAACCTCTCGTTGCCGATGGTGATGACCTGTCCGTCAGGCAGCTCGTAGCTCTTctccagagaggaagaggaggcagcGGTGCCCATCTCCTGCTCAAAGTCCAGCGCCACGTAGCACAGCTTCTCCTTGATGTCTCGTACGATTTCCCTCTCGGCCGTGGTGGTGAAGCTGTAACCGCGCTCCGTCAGGATCTTCATCAGGTAGTCTGTGAGGTCGCGGCCGGCCAGATCCAGACGCAGGATGGCGTGGGGCAGAGCGTAGCCCTCGTAGATGGGTACTGTGTGGGTCACGCCGTCACCGGAGTCCATGACGATACCGGTGGTACGGCCAGAGGCGTACAGGGACAACACGGCCTGGATGGCCACGTACATGGCAGGGGTGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCCCTGTTGGCTTTGGGGTTGAGGGGGGCCTCTGTGAGCAGGACGGGGTGCTCCTCTGGAGCCACCCTCAGCTCGTTGTAGAAGGTGTGATGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGACGATGCCATGCTCAATGGGGTACTTCAGGGTCAGGATGCCCCTCTTGCTCTGAGCCTCGTCTCCCACGTAGCTGTCTTTCTGGCCCATCCCAACCATCACTCCCTGAAAACAGGACAGGGTTAGTATATACAGACGCCAGCTAGGACACGGCTAGCATACCAACTACTAGATTGGATGGGGTTAGTAAATACAGACGCCAGCTAGGACACAACTAGCATACCAACTACTAGATTGGATGGGGTTAGTATATAGTTAGCAGTGTCCTCAATATTAAGTCTGACTGCATTGAGGTGCATAAGGCTAGTTGTATGTAGCCACTTCTCAGGGATGTGATCTATGGGATGGTTCATCTCTAGTCTAGTCACTAGGCCTCAAATTAATATTAAACAGACAAATCAAACTAGAACAATATGTAATTTTTACAGTTCAAAACGTCCCAAAGCCCATCATGAGATTTGTTTACATTTGGGCATTAGCAATGACAGGTCCATCTCCGGGTAAAAACCCCTTGTTCCTCACCTGATGCCTGGGACGCCCGACGATGGAGGGGAAGACAGCCCGAGGCGCGTCATCTCCGGCGAATCCGGCTTTGCACATACCGGATCCGTTGTCAACAACCAGTGCGGCGATTTCATCTTCCATTTTGAACTGAAACAAAAGAAACCGcatgtaaaaaacaaacaaaggcTACAAAGACAGACGtttgagaagagagaagagggttaaAAAAAATGCGTAACCCGCAACACTTCCGCACAGCGCCACCCTTAAGAAACACTTCCGCATAGAGCCCTGTGACGACATGACGCAACACGTCCTGCCTTCCTGGCAGGTTGTAATGACGCGTTCTGACCGCTAGGTGGAAACCGCACTGCGCCCTCGAGACAAAGGAAAATGGCGCTGCGTTCTTTCGATATTACCATATAAGGACATGTTTTGGGATTCTCAGCAGCCCTTTTGGCGGTTCACAACCAGAGAATAGGAACATTTTTTTGGACCAAGACCCGGATGTGACCACTCCCCTCTTAACCAAGTAGCATTTCAACCCCCTGGCCGCCATTTTATAAACTCCCCCAAAAACACAAGACGACCGTGGAACTCTGACTTTAAAATGAGCGTTAATGACATGGAAAATAAACCTCTTAATAAAATTTAAAACGCACTTCTCAATATGAAATCCCAAGTCTATAACTCCCATTCAAATGCTGATTTACTACTAAAGGAGGGGACTTAAAAAACAAATACATAATTTAGTTAACTTCCAAGTCCAGTGTTGTGAATAAACCTGCCAGGTTAGAGGCCATTTCCTGCTGGCCACGCCTTGGTCACTGTTGACGAGGTCCCCCCCTTTCCTCCTAACCGGACCGGTTTCCCGAATAACCGCTCAGGTTATAATAACTACGGCTTTAAGTACCACACACATACCAATAAATAAAGTTAGTTTAATGTCTTATATTAAAACAATATGTGTCGAGTGGTTGTTAAAAAACGTTAATGTTAACACGCAGGATAAACTAGGTCTGAACCTACAGCCGCAGAGCTCAACACAAAGACTCCCTGAGACCCCCCTTTTACCCGGGAGGGGGGGTCCAACAGCTGCTAAAAAAACAAATCAGTTTAACACCATGAtaagataaatatatatttactgTAGGTGGTTGTTGTATGGGGGTTAAGCCGGTTATTGATTACCTAACAAGTCACACCTGCATATCCGCCCAATTAATTAAACAAGATGTCCACTATAAAGTCATGTTTCAAACCTAGTAAATACATTTAGTGAACCTCATCAACCATGCATATTACTGAAAAACAGCATGTTAACTTAGTCTACCCTATAAAATCATACAAACAGCCTTGTGGTTCATGTCCTCCACTATATAACAAACCAGATTCAAATGAATTAAAATATGCAACCAGATACGTGTTTACTTTGTGTCTGTTACCAAAACAAACGCCATTAAATAGTAGAGCTATGTAGGTTATTCTTACCTTTTGGTTTTGGGAGGGGGGTGTTTCAAGGGTAAATGATATAATCCCGCACGAACTGCGTGTGACGGCGCCTCAAAGTGAACCGGTAGTCGGTGGGCGCGTGGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677846 lncRNA downstream 16199 819209 ~ 822984 (-) True G2339086
TU2677816 lncRNA downstream 23629 814084 ~ 815554 (-) True G2339063
TU2677837 lncRNA downstream 49916 788494 ~ 789267 (-) True G2339078
TU2677834 lncRNA downstream 74560 763828 ~ 764623 (-) True G2339075
TU2677830 lncRNA downstream 79422 757915 ~ 759761 (-) True G2339072
TU2677860 lncRNA upstream 13144 857248 ~ 857780 (-) True G2339096
TU2677861 lncRNA upstream 18627 862731 ~ 863147 (-) True G2339097
TU2677864 lncRNA upstream 29767 873871 ~ 874561 (-) True G2339099
TU2677810 lncRNA upstream 49184 893288 ~ 923607 (-) True G2339057
TU2677872 lncRNA upstream 60214 904318 ~ 905325 (-) True G2339106
XM_036972314.1 mRNA downstream 30313 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA downstream 39167 799163 ~ 800016 (-) True LOC118947119
XM_036972303.1 mRNA downstream 326711 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 326711 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 326726 446500 ~ 512457 (-) False LOC110511701
XM_036972318.1 mRNA upstream 11258 855362 ~ 957736 (-) False LOC110516334
XM_036972323.1 mRNA upstream 11258 855362 ~ 958476 (-) False LOC110516334
XM_036972324.1 mRNA upstream 11258 855362 ~ 958476 (-) False LOC110516334
XM_036972317.1 mRNA upstream 11258 855362 ~ 958478 (-) False LOC110516334
XM_036972319.1 mRNA upstream 11258 855362 ~ 958478 (-) False LOC110516334
TU2677748 other downstream 143331 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 173086 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 174498 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 268805 569827 ~ 570378 (-) True G2338725
TU2677193 other downstream 360122 462532 ~ 479061 (-) True LOC110511701
TU2677876 other upstream 96872 940976 ~ 941892 (-) True G2339109
TU2677813 other upstream 119045 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 153827 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 156915 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 182895 1026999 ~ 1029218 (-) True LOC110518374

Expression Profile