RNA id: TU2677860


Basic Information

Item Value
RNA id TU2677860
length 478
lncRNA type intronic
GC content 0.56
exon number 2
gene id G2339096
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 857248 ~ 857780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAcaccacacccccacacacacaccctaccacaCCacacaccctaccacaccatataccacacccccacacacaccctaccacacaccacacccccAAACACACCCTACCTTGTACTACACCCCCAAACACAccctacccccacacacaccctacccccGCACACACCCTGCCACACCACACCCTGCCACACCACACCCTACCACACCACACCCTGCCACACCACACCCTACCACACCCTATTTGTTGTTAACGTGTCTCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCTCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCTCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCTCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCCCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCTCTGCAGTGGGCTCTGTACCAGTGTGTTAACGTGTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677782 lncRNA downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677786 lncRNA downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677787 lncRNA downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677789 lncRNA downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677791 lncRNA downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677861 lncRNA upstream 4951 862731 ~ 863147 (-) True G2339097
TU2677864 lncRNA upstream 16091 873871 ~ 874561 (-) True G2339099
TU2677810 lncRNA upstream 35508 893288 ~ 923607 (-) True G2339057
TU2677872 lncRNA upstream 46538 904318 ~ 905325 (-) True G2339106
TU2677880 lncRNA upstream 84363 942143 ~ 942997 (-) True G2339110
XM_036972314.1 mRNA downstream 48378 780766 ~ 808870 (-) True LOC110517482
XR_005041775.1 mRNA downstream 57232 799163 ~ 800016 (-) True LOC118947119
XM_036972303.1 mRNA downstream 344776 446500 ~ 512472 (-) False LOC110511701
XM_036972305.1 mRNA downstream 344776 459697 ~ 512472 (-) False LOC110511701
XM_036972304.1 mRNA downstream 344791 446500 ~ 512457 (-) False LOC110511701
XR_005041776.1 mRNA upstream 545 858325 ~ 958478 (-) False LOC110516334
XM_036972322.1 mRNA upstream 2463 860243 ~ 958479 (-) True LOC110516334
XM_036972330.1 mRNA upstream 115961 973741 ~ 1003184 (-) False LOC110513313
XM_036972326.1 mRNA upstream 168965 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 226192 1083972 ~ 1084783 (-) False LOC118947123
TU2677784 other downstream 13144 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 161396 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 191151 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 192563 664228 ~ 664685 (-) True G2338753
TU2677280 other downstream 286870 569827 ~ 570378 (-) True G2338725
TU2677876 other upstream 83196 940976 ~ 941892 (-) True G2339109
TU2677813 other upstream 105369 963149 ~ 969154 (-) True G2339060
TU2677900 other upstream 140151 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 143239 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 169219 1026999 ~ 1029218 (-) True LOC110518374

Expression Profile