RNA id: TU2677813


Basic Information

Item Value
RNA id TU2677813
length 4440
RNA type TUCP
GC content 0.49
exon number 3
gene id G2339060
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 963149 ~ 969154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgagaggttgttctgtctagagactgtatatacctgtctgagaggttgttctgtctagagactgtatatacctgtccGAGTGGTTtttctgtctagagactgtatataccggtctgagaggttgttctgtctagagactgtatatacctgtctgagaggttgttctgtctagagactgtatatacctgtctgagaggttgttctgtctagagactgtatatacctgtctgagaggttgttctgtctagagactgtatatacctgtccGAGTGGTTtttctgtctagagactgtatataccggtctgagaggttgttctgtctagagactgtatatacctgtctgagaggttgttctgtctagggtctgagaggttgttctgtctaaGGTCTGAGAGAGCCCCTACCAGCCTGCTAACTTTAGCCCTACAAGCCTGATAACAATAgccctaccagcctgctaacATTAGCCCCTACCAGCCTGATAACATTATCCCCTACCAGCCTGCTAACATTAGCCCCTACCAGCCTGATAACATTAGCCCCTACCAGCCTGATAACATTATCccctaccagcctgctaacgttagcccctaccagcctgctaacgttagcccctaccagcctgctaacgttagcccctaccagcctgctaactttatcccctaccagcctgctaactttagcccctaccagcctgctaacgttagcccctaccagcctgctaactttagccctaccagcctgctaactttagccctaccagcctgctaacATTAGCCCAACCAGCCTGATAACATTTGCCCCTACCAGCCTGATAACATTATCCCCTACCAGCCTGATAACTTTAGCCCCTACCAGCCTGCTAACTTTAGCCCTACCAGCCTACTAACGTTAGCCCCTACCAGCCTGATAACGTTAGCCCCTACCAGCCTGCTAACTTTACCccctaccagcctgctaacgttagcccttACCAGCCTGCTAACGTAAGCCCCTACCAgtctgctaacgttagccctaccatcctgctaacgttagcccctaccagcctgctaacgttagcccctaccagcctgctaacgttagcccctactagcctgctaacgttaaCCCCTACTAGCCTGCTAACTTTAGCCCTACTAGCCTGCTAAAGTTATCACtaccagcctgctaacgttagcccctACTAGCCTGCTAACTTTAGCCCCTACCAGCCTGCTAACATTACGTTAGCACTGAGTGAGTCAGCCAGTTGCTATTAACACCACCTAGCATACAGTTACATTAAAGTAAACCAACGTTttgggttttatgggtattatgactcatactgtggtactccaTAGTGATGTTTCTCCTCTCTGGGTGCAGTTGGTCTGTGTGACCAgcagaggtctctctctctccaacagtgAACTGGACTGAGCTCAGCCTCCAGGGATGCAGTTGGTCTGTGTGACCAgcagaggtctctctctctccaacagtgAACTGGACTGAGCTCGGCCTCCAGGGATGCAGTTTCCTTTCTCCACCCTTCTCACCAAATCCACTCCCAGTCATGGATTTAGAAAATGATGGAGACTCCCTACAGCCAATgctttacaccaatccaatgcttttaaaatCTTTGTCAGGAAACGTGGAAGGGCTTTGGGAGAAGTGGTCCGTGTTGATGCTGATCTGTTCTCACTGGTAGGAACAGAAAGGTAATCCCTACAGGATTACAATGATAATTACATCACACAAATCAATTTATTGTTTAACATTTtggtgggtgtgggggggggggggtgtatatctTACAGAGTGacttcattgattgattgattgaattgatgtcacttattggtcagagagactccaatgctgtctcaggtctgaatctctgctgtgcgccttctaggcagagttgcaaagaaaaatccatatctcagactggccaataaaagagggcaaaagaacacagacactggacagaggaactctgcctagaaggtcagcatccaggagtcgcctcttcactgttgacattgagactggacaTAGGAACTCTGCCTTAGAAGGTcagcatccaggagtcgcctcttcactgttgacgttgagactggacagaggaactctgccttagaaggtcagcatccaggagtcgcctcttcactgttgacgttgagactggacagaggaactctgcctagaaggccagcatccaggagtcgcctcttcactgttgacgttgagactggacagaggaactctgcctagaagGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGTCTGGGAGGACAGGACTCTCTGCTGACGGTCTGGGAGGACAGGACTCTCTGCTGACGGTCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCTGCTGACGGCCTGGGAGGACAGGACTCTCCGCAGCTGCCATCATAACATCTGTTTTATTTCtgcggtacagttgataaccatggcGATGAATGGTAAGAAGCCAACCTTACCGAAGCACACGTTCATATCTCTCTGTGTTGGCCGATGCCTACTATCCATCCTGTACTGTCTCCACTGCCTCAGCAGAGAATACATTCTATTCTAACAACctatttgatttttttatttaactcgacaagtcagttaagaactaaatcttatttacaatgacggtctaggaacagtgggttaactgccttgttcaggggcagaaccacagaaTTTTACCATATAAAGACAGGGACAcgttctagcaacctttcggttactggccctacgctctaaccactaggctgcctgcaggttactggcccaacgctctaaccactaggctgcctgttggttactggcccaacgctctaaccactaggctgcctgttggttactggcccaacgctctaaccactaggcagcctgttggttactggcccaaagctctaaccactagtctacctgctggttactggcccaacgctctaaccactagtctacctgctggttactggcccaacgctctaaccactaggctgcctgttggttactggcccaacgctctaaccactaggctgcctgttggttactggcccaacgctctaaccactaggctgcctgtctctctcacactggGTACTTCTGACCCCCCCCCTCAGCAACatgggcgtacacatcacagacaaactgaattggtccacccacacagacagcatcgtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaatttgccgtgtcaccaaaagcactcacaaacttctacagatgcacaatcgagagcatcctgtcgggctgtatcaccgcctggtacggcaactgctccgcccagaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctgtctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatactgactcaactccagccactttaataatgggaattgatgagaaatgatgtaaatatatcactagccactttaaacaatgctacctaatataatgcttacataccctacattattcatctcatctcatatgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgcactcaataccatctactgtatcttgcctatgccgctctgtaccatcactcattcatatatctttatgtacatattctttatccccttacacttgtgtgtataaggtagtagttctggaattgttagctagattactcgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatctgcacATTTGACACAGTTTTTTTCCACCGATACAACACATTCCTTTGTCCCCATGCCCTCctacacacttctcacatctaggaatgtccctcctacacactgctgcaacatgaccataagctTGGCATCTGAAACACCTCAGTGTGTTCGGCACAAAGGCGCTCAGTTGGATAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677883 lncRNA downstream 18980 943375 ~ 944169 (-) True G2339111
TU2677880 lncRNA downstream 20152 942143 ~ 942997 (-) True G2339110
TU2677810 lncRNA downstream 39542 893288 ~ 923607 (-) True G2339057
TU2677872 lncRNA downstream 57824 904318 ~ 905325 (-) True G2339106
TU2677864 lncRNA downstream 88588 873871 ~ 874561 (-) True G2339099
TU2677894 lncRNA upstream 28777 997931 ~ 999857 (-) False G2339121
TU2677898 lncRNA upstream 28777 997931 ~ 999857 (-) False G2339121
TU2677904 lncRNA upstream 40901 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA upstream 41117 1010271 ~ 1010630 (-) True G2339123
TU2677803 lncRNA upstream 52798 1021952 ~ 1024681 (-) True G2339050
XM_036972321.1 mRNA downstream 4670 855362 ~ 958479 (-) False LOC110516334
XM_036972322.1 mRNA downstream 4670 860243 ~ 958479 (-) True LOC110516334
XM_036972317.1 mRNA downstream 4671 855362 ~ 958478 (-) False LOC110516334
XM_036972319.1 mRNA downstream 4671 855362 ~ 958478 (-) False LOC110516334
XM_036972320.1 mRNA downstream 4671 855362 ~ 958478 (-) False LOC110516334
XM_036972330.1 mRNA upstream 4587 973741 ~ 1003184 (-) False LOC110513313
XM_036972326.1 mRNA upstream 57591 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 114818 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 188898 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 357514 1326668 ~ 1417233 (-) False LOC110516509
TU2677876 other downstream 21257 940976 ~ 941892 (-) True G2339109
TU2677784 other downstream 119045 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 267297 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 297052 663537 ~ 666097 (-) True G2338752
TU2677315 other downstream 298464 664228 ~ 664685 (-) True G2338753
TU2677900 other upstream 28777 997931 ~ 999857 (-) False G2339121
TU2677806 other upstream 31865 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 57845 1026999 ~ 1029218 (-) True LOC110518374
TU2677965 other upstream 138578 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 189393 1158547 ~ 1159571 (-) False LOC110516784

Expression Profile