RNA id: TU2677900


Basic Information

Item Value
RNA id TU2677900
length 1370
RNA type TUCP
GC content 0.35
exon number 4
gene id G2339121
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 997931 ~ 1168624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTGGGGTGTCCTAGGGACAGAGTCTGAAGGGCCTCAGTATAACTGGGGTGTCAGTataactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattagatattactgtactgatggagctagaaacacaagcatttagttagatattactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattagatattactgttggagctagaaacacaagcattagatattactgtactgttggagctagaaacacaagcattagatattactgtactgatggagctagaaacacaagcattagatattactgtactgatggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaatcattagatattactgcactgttggagctagaaacacaagcattagatattactgtactgttggagctagaaacacaagcattatatattactgcactgttggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaagcattagatattactgtactgttggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctaggaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgatggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttagctagaaacacaagcattatatattactgtactgatggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctaggaacacaagcattatatattactgtactgttggagctagaaacacaagcatttgatattactgtactgttggagctagaaacacaagcatttagttatatattactgtactgttggagctagaaacacaatcattatatattactgtactgttggagctaggaacacaagcatttgatattactgtactgttggagctagaaacacaagcatttagttatatattactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677883 lncRNA downstream 53762 943375 ~ 944169 (-) True G2339111
TU2677880 lncRNA downstream 54934 942143 ~ 942997 (-) True G2339110
TU2677810 lncRNA downstream 74324 893288 ~ 923607 (-) True G2339057
TU2677872 lncRNA downstream 92606 904318 ~ 905325 (-) True G2339106
TU2677864 lncRNA downstream 123370 873871 ~ 874561 (-) True G2339099
TU2677904 lncRNA upstream 10198 1010055 ~ 1011683 (-) True G2339122
TU2677905 lncRNA upstream 10414 1010271 ~ 1010630 (-) True G2339123
TU2677803 lncRNA upstream 22095 1021952 ~ 1024681 (-) True G2339050
TU2677924 lncRNA upstream 37943 1037800 ~ 1040389 (-) False G2339133
TU2677921 lncRNA upstream 40130 1039987 ~ 1040786 (-) True G2339133
XM_036972321.1 mRNA downstream 39452 855362 ~ 958479 (-) False LOC110516334
XM_036972322.1 mRNA downstream 39452 860243 ~ 958479 (-) True LOC110516334
XM_036972319.1 mRNA downstream 39453 855362 ~ 958478 (-) False LOC110516334
XM_036972326.1 mRNA upstream 26888 1026745 ~ 1048179 (-) False LOC110518374
XR_005041780.1 mRNA upstream 84115 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 158195 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 326811 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 326811 1326668 ~ 1417782 (-) False LOC110516509
TU2677813 other downstream 28777 963149 ~ 969154 (-) True G2339060
TU2677876 other downstream 56039 940976 ~ 941892 (-) True G2339109
TU2677784 other downstream 153827 839183 ~ 844104 (-) False G2339043
TU2677748 other downstream 302079 692505 ~ 695852 (-) False G2339019
TU2677314 other downstream 331834 663537 ~ 666097 (-) True G2338752
TU2677806 other upstream 1162 1001019 ~ 1002907 (-) True LOC110513313
TU2677915 other upstream 27142 1026999 ~ 1029218 (-) True LOC110518374
TU2677965 other upstream 107875 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 158690 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 235347 1235204 ~ 1235588 (-) True G2339202

Expression Profile