RNA id: TU2677899


Basic Information

Item Value
RNA id TU2677899
length 1202
lncRNA type intronic
GC content 0.35
exon number 2
gene id G2339121
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 997931 ~ 1168624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatgtattactgtactgttggagctagaaacacaagcattatatattactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattagatattactgttggagctaaaaacacaagcattagatattactgtactgttggagctagaaacacaagcattagatattactgttggagctaaaaacacaagcattagatattactgtactgttggagctagaaacacaagcattatgtattactgtactgttggagctagaaacacaagcattatatattactgcactgttggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaagcattatatattgctgcactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcattatatattactgttggagctagaaacacaagcattatatattactgtactgttggagctagaaacacaagcatttagttagatattgctgcactgttggagctagaaacacaagcattgtatattactgttggagctagaaacacaagcattatatattactgcactgttggagctagaaacacaagcatttagttagatattgctgcactgttggagctagaaacacaagcatttagttagatattactgtactgttggagctagaaacacaagcattatatattactgcactgttggagctagaaacacaagcatttagttagatattattgcactgttggagctagaaacacaagcattgtatattactgcactgttggagctagaaacacaagcattagatattactgtactgttggagctagaaacacaagcattagatattactgtgctgttggagctaggaacacaagcattgtatattactgactgttggagctagaaacacaagcattagatattactgactgttggagctaggaacacaagcatttagttagatattactgactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678020 lncRNA downstream 6100 1159863 ~ 1160811 (-) True LOC110516784
TU2678017 lncRNA downstream 11102 1150813 ~ 1155809 (-) True G2339176
TU2678014 lncRNA downstream 14512 1150813 ~ 1152399 (-) False G2339176
TU2678030 lncRNA upstream 17672 1186296 ~ 1197554 (-) True G2339184
TU2678031 lncRNA upstream 27160 1195784 ~ 1196260 (-) True G2339185
TU2677991 lncRNA upstream 33883 1202507 ~ 1202890 (-) True G2339173
TU2678041 lncRNA upstream 51279 1219903 ~ 1220512 (-) True G2339195
TU2678042 lncRNA upstream 51939 1220563 ~ 1221550 (-) True G2339196
XR_005041780.1 mRNA downstream 82128 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 118732 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 163727 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 208432 860243 ~ 958479 (-) True LOC110516334
XR_005041776.1 mRNA downstream 208433 858325 ~ 958478 (-) False LOC110516334
XM_036972302.1 mRNA upstream 158044 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 158044 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 160274 1328898 ~ 1417783 (-) False LOC110516509
XM_036972341.1 mRNA upstream 267875 1436499 ~ 1488403 (-) False LOC118947127
TU2677994 other downstream 7340 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 44272 1107732 ~ 1122639 (-) True G2339156
TU2677915 other downstream 137693 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 164004 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 167054 997931 ~ 999857 (-) False G2339121
TU2678050 other upstream 66580 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 73450 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 73450 1242074 ~ 1243213 (-) True G2339205
TU2678190 other upstream 276337 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 280914 1449538 ~ 1454271 (-) False LOC118947127

Expression Profile