RNA id: TU2677931


Basic Information

Item Value
RNA id TU2677931
length 454
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G2339139
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1073281 ~ 1073949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAGCAAAAAAATGGCTCCCATCCCACCCTTCCCTCTCCCACAGCCCTCTTCATTGTAAATGAGGTACAATAGCACTTAATAATGACCACCGTGTGTACTAAACAGCTGGAATGGTAACAATAACCTTGCCCAATCACAAAGACACCCCTATacggggagtagggagtaggggacTAGAGAGTAGGGGGCTAGAGAGTAGTGGGCTAGAGAGTAGTGGGCTAGAGAGTAGGGGGCTAGAGAGTAGGGGTGTATTTGAGATTAGACGCTCCAGGGTAATGAAGCACACAGGTGGAGTAGATGAGCCCTGATGTCCCGTAGAAAATAACTGACGATCCAGAACAGCCAGGCGATCCAGACCTGACTAGACGAGCCAGAGTAGAACAGCCAGGCGATGATCCTGACGATTCAGCCGGAGCAGCCTCGGCAGCCACAGTGGGTGCACTCTATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677927 lncRNA downstream 26967 1045705 ~ 1046314 (-) True G2339136
TU2677921 lncRNA downstream 32495 1039987 ~ 1040786 (-) True G2339133
TU2677924 lncRNA downstream 32892 1037800 ~ 1040389 (-) False G2339133
TU2677803 lncRNA downstream 48600 1021952 ~ 1024681 (-) True G2339050
TU2677904 lncRNA downstream 61598 1010055 ~ 1011683 (-) True G2339122
TU2677948 lncRNA upstream 1759 1075708 ~ 1078956 (-) True G2339146
TU2677954 lncRNA upstream 9743 1083692 ~ 1085649 (-) False LOC118947123
TU2677956 lncRNA upstream 9743 1083692 ~ 1086303 (-) True LOC118947123
TU2677961 lncRNA upstream 16353 1090302 ~ 1090593 (-) True G2339154
TU2677970 lncRNA upstream 23548 1097497 ~ 1105329 (-) True G2339157
XM_036972326.1 mRNA downstream 25102 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 70097 973741 ~ 1003184 (-) False LOC110513313
XM_036972321.1 mRNA downstream 114802 855362 ~ 958479 (-) False LOC110516334
XM_036972322.1 mRNA downstream 114802 860243 ~ 958479 (-) True LOC110516334
XM_036972320.1 mRNA downstream 114803 855362 ~ 958478 (-) False LOC110516334
XR_005041780.1 mRNA upstream 10023 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 84103 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 252719 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 252719 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 254949 1328898 ~ 1417783 (-) False LOC110516509
TU2677915 other downstream 44063 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 70374 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 73424 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 104127 963149 ~ 969154 (-) True G2339060
TU2677876 other downstream 131389 940976 ~ 941892 (-) True G2339109
TU2677965 other upstream 33783 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 84598 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 161255 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 168125 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 168125 1242074 ~ 1243213 (-) True G2339205

Expression Profile