RNA id: TU2677948


Basic Information

Item Value
RNA id TU2677948
length 1782
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id G2339146
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1075708 ~ 1078956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGGTACATTCAGAACAGCATTTaaattgttatagtgttatatgaTAGATAGTATAGTACCTTAGGTCCCACCCAGTCAAAGACAGTCGGTTATAACAGACCAATAGGATCAGTTATAGTACCTTAGGTCCCACCCTGTCAAAGACAGACGGTTATAACAGACCAATAGGATCAGTTATAGTACCTTAGGTCCCACCCTGTCAAAGACAGACGGTTATAACAGACCAATTAGGATCAGTTATAGTAACTTAGGTCCCACCCTGTCAAAGACAGACAGTCATAACAGACCAATTAGGATCAGTTATAGTACCTTAGGTCCCACCCTGTCAAAGACAGACAGTTATTACAGACCAAGCGTAAATAGGGTGGGACCTAAGGTACTATTACAGACCCacagcagttattaattcagacccataaccattcagagggtggtaggctatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagacccataaccattcaggtggtggtagactatagcagttattaattcagacccataacaattcagacccataaccattcagacccataaccattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccaaaaccattcaggtggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccaaaaccattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccagaaccattcagacccataaccattcagacggtggtagactatagcagttattaattcagacccataaccattcaggtggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtaggctatagcagttattaattcagacccataaccattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagacccataaccattcagacccataaccattcagacccataaccattcagatggtggtagactatagcagttattaactcagacccataaccattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagatggtggtagactatagcagttattaattcagacccataaccattcagacccataaccattcagacccataaccattcagacccataaccattcagatggtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677931 lncRNA downstream 1759 1073281 ~ 1073949 (-) False G2339139
TU2677932 lncRNA downstream 1759 1073281 ~ 1073949 (-) False G2339139
TU2677933 lncRNA downstream 1759 1073281 ~ 1073949 (-) False G2339139
TU2677934 lncRNA downstream 1759 1073281 ~ 1073949 (-) False G2339139
TU2677935 lncRNA downstream 1759 1073281 ~ 1073949 (-) False G2339139
TU2677954 lncRNA upstream 4736 1083692 ~ 1085649 (-) False LOC118947123
TU2677956 lncRNA upstream 4736 1083692 ~ 1086303 (-) True LOC118947123
TU2677961 lncRNA upstream 11346 1090302 ~ 1090593 (-) True G2339154
TU2677970 lncRNA upstream 18541 1097497 ~ 1105329 (-) True G2339157
TU2677971 lncRNA upstream 32223 1111179 ~ 1121122 (-) True G2339158
XM_036972326.1 mRNA downstream 27529 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 72524 973741 ~ 1003184 (-) False LOC110513313
XM_036972321.1 mRNA downstream 117229 855362 ~ 958479 (-) False LOC110516334
XR_005041780.1 mRNA upstream 5016 1083972 ~ 1084783 (-) False LOC118947123
XM_036972337.1 mRNA upstream 79096 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 247712 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 247712 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 249942 1328898 ~ 1417783 (-) False LOC110516509
TU2677915 other downstream 46490 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 72801 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 75851 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 106554 963149 ~ 969154 (-) True G2339060
TU2677876 other downstream 133816 940976 ~ 941892 (-) True G2339109
TU2677965 other upstream 28776 1107732 ~ 1122639 (-) True G2339156
TU2677994 other upstream 79591 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 156248 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 163118 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 163118 1242074 ~ 1243213 (-) True G2339205

Expression Profile