RNA id: TU2677986


Basic Information

Item Value
RNA id TU2677986
length 2327
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G2339172
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1145517 ~ 1149117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTCCACATCCTTGAGTTTTATTTGTCTTGGGTTTCATTACATTAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAAAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGAGGACACACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACATTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACATTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGTAGAGGACAACAGAGAAGGAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAGACAGTCAATATTCAAGAGGTATGATGAAGTGGCAGGTGACATGAAAACATTTCATCTTGAAAACAGGTCTTTAAAGTTCCTCCAGACCAGGCATGGGGAACCCCCCAGCGAAAGCCTCCACCTCCCCCCTCAGCTCTGCTACCCTCTCCTGGTGCTTCCCCTCCCCTGCCAGGGCCTCCTTAAACTCCTTCAGGGTCGCCTTGGGCTGCAGAGAGGCCTGGATGTCCAGGGTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677981 lncRNA downstream 8292 1137394 ~ 1138351 (-) True G2339168
TU2677980 lncRNA downstream 9600 1136395 ~ 1137043 (-) True G2339167
TU2677962 lncRNA downstream 11889 1134422 ~ 1134754 (-) True G2339155
TU2677971 lncRNA downstream 25521 1111179 ~ 1121122 (-) True G2339158
TU2677970 lncRNA downstream 41314 1097497 ~ 1105329 (-) True G2339157
TU2677999 lncRNA upstream 1696 1150813 ~ 1152399 (-) False G2339176
TU2678000 lncRNA upstream 1696 1150813 ~ 1152478 (-) False G2339176
TU2678001 lncRNA upstream 1696 1150813 ~ 1152399 (-) False G2339176
TU2678005 lncRNA upstream 1696 1150813 ~ 1152399 (-) False G2339176
TU2678008 lncRNA upstream 1696 1150813 ~ 1152478 (-) False G2339176
XR_005041780.1 mRNA downstream 61860 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 98464 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 143459 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 188164 860243 ~ 958479 (-) True LOC110516334
XR_005041776.1 mRNA downstream 188165 858325 ~ 958478 (-) False LOC110516334
XM_036972337.1 mRNA upstream 8935 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 177551 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 177551 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 179781 1328898 ~ 1417783 (-) False LOC110516509
XM_036972341.1 mRNA upstream 287382 1436499 ~ 1488403 (-) False LOC118947127
TU2677965 other downstream 24004 1107732 ~ 1122639 (-) True G2339156
TU2677915 other downstream 117425 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 143736 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 146786 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 177489 963149 ~ 969154 (-) True G2339060
TU2677994 other upstream 9430 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 86087 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 92957 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 92957 1242074 ~ 1243213 (-) True G2339205
TU2678190 other upstream 295844 1444961 ~ 1454271 (-) False LOC118947127

Expression Profile