RNA id: TU2678005


Basic Information

Item Value
RNA id TU2678005
length 1298
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G2339176
representative False

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1150813 ~ 1155809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagttTGTTTTATGCCAATTTGTTTTCCTACCCTGCTCCGTGTATTCAATGTGTTGCTGATGGGGGATCCTAATGAATCAAAAGTCCATTTGAAATGTGCCGCCCGGTGCGGCTCGTCCCCGGGGGTGAAGCGTCCGACAGTTCCTACTCTGTACGTTCCTAGTTACGGCGCTACTACACCCGGGCGGCGGCAACCACTTTCCCCATAGTAACCATCCAGCGTCTCCCTGGACACTTTTTAAAACTACTACTAAATGTGACGTATTGAAACTGTTTTTCGAAGGTTGTCGTAGTAACGTTGTGGGAGTGTTGTGACGTCAGCATGAGGGTATAAGGGGGTCGCTTTTAAACGTTGACGTGACGACCACCGTTTTACGGAGATGTTGACCAAATGTTTGTGGATTGACACGataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatcaacacatctataacctgttaccagaccattccatctataacctgttacctgaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatcaacacatctataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttaccagaccattccatctataacctgttacctgaccattccatctataacctgttaccagaccacTCGCCTGATGTCCCCAGGTGTGAATGAGTCTCGCCTGATGTCCCCAGGTGTGAATGTCTGGTTCACACCATTAGAGGGGTGAAATATAACTGACCATAAGactgatctagaatcagcttcctccCCTCCAGTCCTAACGGCCACCATTAGAGGGGTGATATAagactgatctaggaccagtgTTAAACAGGGCTGAATGTCTGGTTCACACCATTAGAGGGGTGATATAagactgatctaggaccagtgTTAAACAGAGCTGAATGTCTGGTTCACACCATTAGAGGGGTGAAATATAACTGACCATAAGactgatctagaatcagcttcctccCCTCCAGTCCTAACGGCCACCATTAGAGGGGTGATATAagactgatctaggaccagtgTTAAACAGAGCTGAATGTCTGGTTCACACCATTTTGATGCTGATTTATTGTTATTGTAATGACATTAAATTGTTGAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2677988 lncRNA downstream 1696 1145517 ~ 1149117 (-) False G2339172
TU2677986 lncRNA downstream 1696 1146643 ~ 1149117 (-) False G2339172
TU2677987 lncRNA downstream 1696 1146643 ~ 1149117 (-) True G2339172
TU2677981 lncRNA downstream 12462 1137394 ~ 1138351 (-) True G2339168
TU2677980 lncRNA downstream 13770 1136395 ~ 1137043 (-) True G2339167
TU2678020 lncRNA upstream 7464 1159863 ~ 1160811 (-) True LOC110516784
TU2678028 lncRNA upstream 13412 1165811 ~ 1169006 (-) True G2339182
TU2677899 lncRNA upstream 14512 1166911 ~ 1168624 (-) False G2339121
TU2677901 lncRNA upstream 14512 1166911 ~ 1168624 (-) True G2339121
TU2678030 lncRNA upstream 33897 1186296 ~ 1197554 (-) True G2339184
XR_005041780.1 mRNA downstream 66030 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 102634 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 147629 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 192334 860243 ~ 958479 (-) True LOC110516334
XR_005041776.1 mRNA downstream 192335 858325 ~ 958478 (-) False LOC110516334
XM_036972337.1 mRNA upstream 5653 1158052 ~ 1183417 (-) False LOC110516784
XM_036972302.1 mRNA upstream 174269 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 174269 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 176499 1328898 ~ 1417783 (-) False LOC110516509
XM_036972341.1 mRNA upstream 284100 1436499 ~ 1488403 (-) False LOC118947127
TU2677965 other downstream 28174 1107732 ~ 1122639 (-) True G2339156
TU2677915 other downstream 121595 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 147906 1001019 ~ 1002907 (-) True LOC110513313
TU2677900 other downstream 150956 997931 ~ 999857 (-) False G2339121
TU2677813 other downstream 181659 963149 ~ 969154 (-) True G2339060
TU2677994 other upstream 6148 1158547 ~ 1159571 (-) False LOC110516784
TU2678050 other upstream 82805 1235204 ~ 1235588 (-) True G2339202
TU2678053 other upstream 89675 1242074 ~ 1243382 (-) False G2339205
TU2678054 other upstream 89675 1242074 ~ 1243213 (-) True G2339205
TU2678190 other upstream 292562 1444961 ~ 1454271 (-) False LOC118947127

Expression Profile