RNA id: TU2678053



Basic Information


Item Value
RNA id TU2678053
length 634
RNA type TUCP
GC content 0.40
exon number 3
gene id G2339205
representative False

Chromosome Information


Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1242074 ~ 1243382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CcaggtagtctataggtctacttatatgtgtaatcaggtagtctataggtctacttctatgtgtaatcagggccaggtagtctataggtctacttatatgtgtaatcaggtagtctataggtctacttctatgtgtaatcagggccaggtagtctataggtctacttatatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatGTGTAATCAGGGCcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttctatgtgtaatcaggtagtctataggtctacttccatGTGTAATCAGGGCcaggtagtctataggtctacttccatgtgtaatcaggtagtctataggtctacttccatgtgtaatcaggtagtctatagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2678051 lncRNA downstream 5055 1236751 ~ 1237019 (-) True G2339203
TU2678047 lncRNA downstream 19036 1222692 ~ 1223038 (-) True G2339199
TU2678046 lncRNA downstream 19311 1222396 ~ 1222763 (-) True G2339198
TU2678045 lncRNA downstream 19787 1221654 ~ 1222287 (-) False G2339197
TU2678044 lncRNA downstream 19787 1221772 ~ 1222287 (-) True G2339197
TU2678057 lncRNA upstream 421 1243803 ~ 1306412 (-) False G2339208
TU2678072 lncRNA upstream 6532 1249914 ~ 1250808 (-) True G2339215
TU2678067 lncRNA upstream 8452 1251834 ~ 1252101 (-) True G2339211
TU2678061 lncRNA upstream 11052 1254434 ~ 1271684 (-) True G2339208
TU2678080 lncRNA upstream 14284 1257666 ~ 1258285 (-) True G2339221
XM_036972337.1 mRNA downstream 58657 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 157291 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 193895 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 238890 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 283595 860243 ~ 958479 (-) True LOC110516334
XM_036972302.1 mRNA upstream 83286 1326668 ~ 1417233 (-) False LOC110516509
XM_036972300.1 mRNA upstream 83286 1326668 ~ 1417782 (-) False LOC110516509
XM_036972301.1 mRNA upstream 85516 1328898 ~ 1417783 (-) False LOC110516509
XM_036972341.1 mRNA upstream 193117 1436499 ~ 1488403 (-) False LOC118947127
TU2678050 other downstream 6486 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 82503 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 119435 1107732 ~ 1122639 (-) True G2339156
TU2677915 other downstream 212856 1026999 ~ 1029218 (-) True LOC110518374
TU2677806 other downstream 239167 1001019 ~ 1002907 (-) True LOC110513313
TU2678190 other upstream 201579 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 206156 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 206418 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile