RNA id: TU2678097


Basic Information

Item Value
RNA id TU2678097
length 264
lncRNA type intronic
GC content 0.36
exon number 3
gene id G2339233
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1342857 ~ 1343631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GatataatgtgttgacaggtataatgtgttgacagatatattgtgttgacaggtatattgTGTTGGCAGatataatgtgttgacaggtataatgtgttgacaggtataatgtgttgacaggtatgttgtgttgacaggtatattgTGTTGGCAGGTAtattgtgttgacaggtataatgtgttgacaggtttaatgtgttgacaggtatgttgtgttgacaggtatattgtgttggcaggtataatgtgttgacaggtataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678075 lncRNA downstream 9527 1326672 ~ 1333330 (-) False LOC110516509
TU2678076 lncRNA downstream 9527 1326672 ~ 1333330 (-) True LOC110516509
TU2678064 lncRNA downstream 28400 1313967 ~ 1314457 (-) True G2339209
TU2678082 lncRNA downstream 70039 1272160 ~ 1272818 (-) False G2339223
TU2678083 lncRNA downstream 70039 1272160 ~ 1272818 (-) True G2339223
TU2678101 lncRNA upstream 12922 1356553 ~ 1357779 (-) True G2339237
TU2678103 lncRNA upstream 15363 1358994 ~ 1359370 (-) True G2339238
TU2678104 lncRNA upstream 17295 1360926 ~ 1361893 (-) True G2339239
TU2678111 lncRNA upstream 38336 1381967 ~ 1382952 (-) True G2339243
TU2678115 lncRNA upstream 44220 1387851 ~ 1388362 (-) False G2339246
XM_036972337.1 mRNA downstream 159440 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 258074 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 294678 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 339673 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 384378 860243 ~ 958479 (-) True LOC110516334
XM_036972341.1 mRNA upstream 92868 1436499 ~ 1488403 (-) False LOC118947127
TU2678053 other downstream 99475 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 99644 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 107269 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 183286 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 220218 1107732 ~ 1122639 (-) True G2339156
TU2678190 other upstream 101330 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 105907 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 106169 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile