RNA id: TU2678103


Basic Information

Item Value
RNA id TU2678103
length 305
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2339238
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1358994 ~ 1359370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtattgagtcattatggggtattgagtcattatggggtattgagtcattatggggtattgagtcattatggggtattgtgccactatggggtattgtgtcattatggggtattgtgtcactatggggtattgtgtcattatggggtattgtgtcattatggggtattgagtcattatggggtattgagtcattatggggtattgagtcattatggggtattgtgtcactatggggtattgtgtcactatggggtattgtgtcactatggggtattgagtcattatggggtattgagtcattatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678101 lncRNA downstream 1215 1356553 ~ 1357779 (-) True G2339237
TU2678097 lncRNA downstream 15363 1342857 ~ 1343631 (-) True G2339233
TU2678075 lncRNA downstream 25664 1326672 ~ 1333330 (-) False LOC110516509
TU2678076 lncRNA downstream 25664 1326672 ~ 1333330 (-) True LOC110516509
TU2678064 lncRNA downstream 44537 1313967 ~ 1314457 (-) True G2339209
TU2678104 lncRNA upstream 1556 1360926 ~ 1361893 (-) True G2339239
TU2678111 lncRNA upstream 22597 1381967 ~ 1382952 (-) True G2339243
TU2678115 lncRNA upstream 28481 1387851 ~ 1388362 (-) False G2339246
TU2678116 lncRNA upstream 28481 1387851 ~ 1389514 (-) True G2339246
TU2678122 lncRNA upstream 30964 1390334 ~ 1393003 (-) True G2339250
XM_036972337.1 mRNA downstream 175577 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 274211 1083972 ~ 1084783 (-) False LOC118947123
XM_036972326.1 mRNA downstream 310815 1026745 ~ 1048179 (-) False LOC110518374
XM_036972330.1 mRNA downstream 355810 973741 ~ 1003184 (-) False LOC110513313
XM_036972322.1 mRNA downstream 400515 860243 ~ 958479 (-) True LOC110516334
XM_036972341.1 mRNA upstream 77129 1436499 ~ 1488403 (-) False LOC118947127
TU2678053 other downstream 115612 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 115781 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 123406 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 199423 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 236355 1107732 ~ 1122639 (-) True G2339156
TU2678190 other upstream 85591 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 90168 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 90430 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile