RNA id: TU2678146


Basic Information

Item Value
RNA id TU2678146
length 240
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2339263
representative True

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1422671 ~ 1422910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAATACTGAGCAGTGGTGGGGAAAGTATCCAATAGACATACTTGAGtagaagtaaagataccttcagagaaaatgactcaagtaaaagtcacccagtaaattaCTACTTTGGTaaaagtgtttggttttaaaaatacacttaagtatcaggctcccgagtggcgcagtggtcttaaggtgtcactacagaccccggttcaatcccaggctgtgtttgggagtcccgtagggcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678140 lncRNA downstream 1169 1418389 ~ 1421502 (-) True G2339258
TU2678128 lncRNA downstream 16015 1403902 ~ 1406656 (-) False G2339253
TU2678130 lncRNA downstream 16015 1405810 ~ 1406656 (-) True G2339253
TU2678131 lncRNA downstream 17301 1403902 ~ 1405370 (-) False G2339253
TU2678122 lncRNA downstream 29668 1390334 ~ 1393003 (-) True G2339250
TU2678158 lncRNA upstream 4221 1427131 ~ 1427820 (-) True G2339267
TU2678159 lncRNA upstream 7381 1430291 ~ 1430571 (-) True G2339268
TU2678205 lncRNA upstream 27587 1450497 ~ 1451872 (-) True G2339288
TU2678208 lncRNA upstream 42544 1465454 ~ 1466490 (-) False G2339291
TU2678209 lncRNA upstream 42544 1465454 ~ 1466490 (-) False G2339291
XM_036972301.1 mRNA downstream 4888 1328898 ~ 1417783 (-) False LOC110516509
XM_036972300.1 mRNA downstream 4889 1326668 ~ 1417782 (-) False LOC110516509
XM_036972302.1 mRNA downstream 5438 1326668 ~ 1417233 (-) False LOC110516509
XM_036972337.1 mRNA downstream 239254 1158052 ~ 1183417 (-) False LOC110516784
XR_005041780.1 mRNA downstream 337888 1083972 ~ 1084783 (-) False LOC118947123
XM_036972341.1 mRNA upstream 13589 1436499 ~ 1488403 (-) False LOC118947127
TU2678053 other downstream 179289 1242074 ~ 1243382 (-) False G2339205
TU2678054 other downstream 179458 1242074 ~ 1243213 (-) True G2339205
TU2678050 other downstream 187083 1235204 ~ 1235588 (-) True G2339202
TU2677994 other downstream 263100 1158547 ~ 1159571 (-) False LOC110516784
TU2677965 other downstream 300032 1107732 ~ 1122639 (-) True G2339156
TU2678190 other upstream 22051 1444961 ~ 1454271 (-) False LOC118947127
TU2678193 other upstream 26628 1449538 ~ 1454271 (-) False LOC118947127
TU2678199 other upstream 26890 1449800 ~ 1454271 (-) True LOC118947127

Expression Profile