RNA id: LOC118947143


Basic Information

Item Value
RNA id LOC118947143
length 1757
RNA type mRNA
GC content 0.63
exon number 2
gene id LOC118947143
representative True

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 1041289 ~ 1043295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGACGGTGAGGAATACAACCCCGAGCGTGATGCGGACGACTACGACGACGACTCGGCCTCACGGTCGTGCTCCTCTTcggaggaagagcgagagggagagcgagagggagacacgGCCGCTGCccgagagcgagacacagccagagagccagagcgagacagagaggacgTTGCTGTCAAAGAACGGCAAAATCAAATGGTCCTCCGTGGCCTATCGCGGCCCGGACCGGCCCCGCGCCATCCGCCGCCACGGCTCCGTCGTGACGCCGGGCCCCAAGGCCTACGCCGCGTCGCGAGCGCTCGACATCGAGTCCACCTTCCGGCTGTTTGTCACACCGGCGATAGAAAGGATCATTGTGGACATGACAAATCTGCAGGGGGTGAGAAAATACGGCGACGGCTGGCGACCCATGGACTCCACCGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCCAGCGTCTACAGGTCCCGAGGCGAGGCCGCGGCCATCCTGTGGGACGCCGAGAGCAGAGCGGCAGGACCGTGTTCCGCGCCACCATGCCGCTCAAGGTGTTTCACAAGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACCGACAGACTGGCGGCCATAAGAGAGGTATGGGACCTGTGGGAGGAGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACCTGACGGTGGACGAACAACTGGTCCCGTTCAGAGGACGCTGTCCTTTCCGACAGTACATTCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtctacacCGGCAAGGCGGCCGGCGGAGGCCCCGAGAAGAACCAGGGCGCCCGCGTTGTCCTCGATCTGACCGAGGGACTGCCGGGCGGTCACAACGTCAcgtgtgacaatttcttcacctccTACGAACTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCACTGCTCGAGTCAAAGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTAGTGTCCTACCTGGCAAAGAGAAATAAGAACGTGCTACTTCTGAGCACGCTGCACGCGGAGCCCGACGTTAGTGTTCGCCGCGACCGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTCGGGACCTACAGCTGCAGACGGATGAccgcccgctggcccctggtcatcttccacaaCATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGGaagcggaacaagaggagggtgttcccgGAGCAGCTCGGAAAGGCACTCGTGAAGCCCTTGATACAAAGAAGGCAGCGTCTCCCCCGCACCCAAGCCGCGTCCGCACTTGTCAAAGTCCTACAGAGTGCCACCGCCGAGGCTCGTCCGCCAGCCCGGGAGCAAGCCGCTGGCCCGGCCGCCGCCGCCCCAGCCGCCCCGCCGGTGGCGAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACGCCAAGACCTACACCGCGTGCTGCAGGTgtaagaaatacatctgcaaaggctGTTCACACGCATACTGTCAAACTTGTGCCCACTGGGCCTTTAGCCAAGACGGGACAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2680773 lncRNA downstream 893 1005923 ~ 1040396 (-) False G2341006
TU2680779 lncRNA downstream 28164 1008177 ~ 1013125 (-) False G2341006
TU2680778 lncRNA downstream 28164 1010653 ~ 1013125 (-) True G2341006
TU2680706 lncRNA downstream 49286 876032 ~ 992003 (-) True G2340949
TU2680734 lncRNA downstream 106025 933491 ~ 935264 (-) True G2340974
TU2680810 lncRNA upstream 15510 1058805 ~ 1115633 (-) True G2341021
TU2680814 lncRNA upstream 16562 1059857 ~ 1064279 (-) True G2341025
TU2680808 lncRNA upstream 25286 1068581 ~ 1074200 (-) True G2341020
TU2680824 lncRNA upstream 74466 1117761 ~ 1120758 (-) True G2341032
TU2680854 lncRNA upstream 140972 1184267 ~ 1184799 (-) True G2341059
trnaa-ugc-275 mRNA downstream 1548 1039670 ~ 1039741 (-) True trnaa-ugc-275
trnat-ugu-133 mRNA downstream 2288 1038930 ~ 1039001 (-) True trnat-ugu-133
trnaa-cgc-68 mRNA downstream 3116 1038102 ~ 1038173 (-) True trnaa-cgc-68
trnat-ugu-132 mRNA downstream 10756 1030462 ~ 1030533 (-) True trnat-ugu-132
trnaa-ugc-274 mRNA downstream 12222 1028996 ~ 1029067 (-) True trnaa-ugc-274
XR_005041795.1 mRNA upstream 9930 1053225 ~ 1053343 (-) True LOC118947154
trnaf-gaa-186 mRNA upstream 16778 1060073 ~ 1060145 (-) True trnaf-gaa-186
trnai-aau-177 mRNA upstream 16933 1060228 ~ 1060301 (-) True trnai-aau-177
trnai-aau-178 mRNA upstream 18481 1061776 ~ 1061849 (-) True trnai-aau-178
trnaf-gaa-187 mRNA upstream 19001 1062296 ~ 1062368 (-) True trnaf-gaa-187
TU2680708 other downstream 112157 878809 ~ 929132 (-) True G2340951
TU2680652 other downstream 226634 806890 ~ 814655 (-) True G2340905
TU2679989 other downstream 924573 116167 ~ 116716 (-) True LOC110514508
TU2679952 other downstream 978151 62414 ~ 63138 (-) True G2340407
TU2680848 other upstream 115303 1158598 ~ 1164054 (-) True G2341053

Expression Profile