RNA id: TU2680650


Basic Information

Item Value
RNA id TU2680650
length 1078
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G2340903
representative True

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 810062 ~ 817814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGTACTCTTTTGGGTCCACATATCCACCACACATCAGCCAGACCACTAGTTTGGTTTAGGCCTGTAACTGGCCAAGTGGCATAAATGGTTATGTTACTGCTGCAATCAGCTTCAGGCAATCTCCCATAGTCCATGCCACTACCTGTACCCGTGATGCAACTGTAATTGCCCCCATATGCCTTAACACCCCAAGGGGCCCGATGAGGAGGTACTGTAGGAAACACAAGGCTCAAAGAGGAACAGAGGGTTGAATTGGGCTgaacctggtaaaaacctctcagaatacacaaccacccctctccttctcctatagCAAATGGGTGTGTAGCCAGAACAAATCTAGCATGACTACAAATAGTGCAGTCCTTTCTTCTCAGGGTTTTAGCTGTGTACCTCATATAAGACAGCCACAAATTGTCCCTACCATCAAAACCAGTCTCAGTGCCTAATTGATCAATAGCTGTGTAGTCTCTAACATTAATTACCTGAATGGGATTTTTTAACACTGTGGTGGTAGGTGGCAGGTTCGGTCCAGGGGTGGTAGAGGAGTGTGTCTGGCCCTGGTTCGTCTGGGACCTCTGGTTTTGGCAGCTCCCTAATAGAAAACACACCCATCGTGTCTGTCCCGGTCCTTTGTAGTCCGAGGGTGTAAGTGCCTGCATCAGAGAgcttaatagttttgatggttaGTAGGATTTCATCACCTTTACAAAGTTCAACAGTGCTCCCAGGTTTTCCCCATATgatggaaaacctatccacctttgtgggatcccctatgctataagaataccctcttctccaatcctagaattgtcccaagttggttatcatgtaatccccatatggacaccctcccccattacacaggtacactgacactcctgtaaaaccccaccctctcccagagaacacatcactagcaagagccagacacatcttcacttctatgaacaaaaacaggggtgacaggacagggagggttacttcattcgagagatggcccccggaatcctgttaattccagttctcctctcgaacactgtttattgttcgacagtgtcagTGTGTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2680677 lncRNA downstream 5683 799794 ~ 804379 (-) False G2340923
TU2680676 lncRNA downstream 5683 801797 ~ 804379 (-) True G2340923
TU2680681 lncRNA downstream 17428 788819 ~ 792634 (-) True G2340925
TU2680647 lncRNA downstream 33974 767980 ~ 776088 (-) False G2340901
TU2680706 lncRNA upstream 58218 876032 ~ 992003 (-) True G2340949
TU2680725 lncRNA upstream 99191 917005 ~ 921098 (-) True G2340968
TU2680734 lncRNA upstream 115677 933491 ~ 935264 (-) True G2340974
TU2680773 lncRNA upstream 188109 1005923 ~ 1040396 (-) False G2341006
TU2680779 lncRNA upstream 190363 1008177 ~ 1013125 (-) False G2341006
trnar-ucg-75 mRNA downstream 134632 675358 ~ 675430 (-) True trnar-ucg-75
trnar-ucg-74 mRNA downstream 136796 673194 ~ 673266 (-) True trnar-ucg-74
trnar-ucg-73 mRNA downstream 138584 671406 ~ 671478 (-) True trnar-ucg-73
trnar-ucg-72 mRNA downstream 139653 670337 ~ 670409 (-) True trnar-ucg-72
trnar-ucg-71 mRNA downstream 140003 669987 ~ 670059 (-) True trnar-ucg-71
XM_036972400.1 mRNA upstream 2634 820448 ~ 824848 (-) True LOC118947141
XM_036972401.1 mRNA upstream 11648 829462 ~ 837281 (-) True LOC118947142
XR_005041789.1 mRNA upstream 31394 849208 ~ 851265 (-) True LOC118947146
XM_036972406.1 mRNA upstream 37159 854973 ~ 857429 (-) False LOC118947149
XM_036972405.1 mRNA upstream 37159 854973 ~ 857555 (-) False LOC118947149
TU2679989 other downstream 693346 116167 ~ 116716 (-) True LOC110514508
TU2679952 other downstream 746924 62414 ~ 63138 (-) True G2340407
TU2680708 other upstream 60995 878809 ~ 929132 (-) True G2340951
TU2680848 other upstream 340784 1158598 ~ 1164054 (-) True G2341053

Expression Profile