RNA id: TU2680773



Basic Information


Item Value
RNA id TU2680773
length 968
lncRNA type read_through
GC content 0.38
exon number 2
gene id G2341006
representative False

Chromosome Information


Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 1005923 ~ 1040396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacccctctgaatacttgcagacattttcattttactcactttttgtctcttccacaatgttattcctcactcctacagtgtccatcacaattacatgcacatggacaattatgcaaattaggtgctgacatcatttagcaacttctagcgacttttaggacagccaatagctactttccttactgaggtgttggcaacactgctaactttaaacatcggctatctgagcagctaactgatcgctgaagctgtacaaagcctttctgtaaatagcccatccaatctacctacctcatccccatattgttttaatatactttctgctctttgcacacctgtatttctacttgcacatcatcatctgctcatctatcactccagtgttaatttgctaaattgtaaatacttcgatactatggcctatttattgccttaccaccatttgcacgcactgtatatagactttcttttttttcttctattgtgttattgactgtacgcttgtttattccatctgtaactctgtgttgttgtttgtgtagcgctgctttgctttatcttggccaggtcgcagttgaatatgaaaacttgttctcaactagcttacctggttaattataggtgaaatttaaaaaaaataagaaacatttttttctttcccagaaaggggatgtagctcagtggtagagggcatgctttgcatgtatgaggtcctgggttcaatccccagcttctccattaaaatttttgcaatggcccatctcctactttccagaatgttgaaattctcagcaggaaacagagatgtgctaaataatttgctcttgtaatctgaagaacatgtgttcaatccctgttcgtacatttatggaacagaagtggcatggttgccaacttcaattgcatcattttcaaaaactgaagttcatgggttagatgactgtccatacttgcttgtatttagaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2680706 lncRNA downstream 13920 876032 ~ 992003 (-) True G2340949
TU2680734 lncRNA downstream 70659 933491 ~ 935264 (-) True G2340974
TU2680725 lncRNA downstream 84825 917005 ~ 921098 (-) True G2340968
TU2680636 lncRNA downstream 186297 811254 ~ 819626 (-) False G2340897
TU2680810 lncRNA upstream 18409 1058805 ~ 1115633 (-) True G2341021
TU2680814 lncRNA upstream 19461 1059857 ~ 1064279 (-) True G2341025
TU2680808 lncRNA upstream 28185 1068581 ~ 1074200 (-) True G2341020
TU2680824 lncRNA upstream 77365 1117761 ~ 1120758 (-) True G2341032
TU2680854 lncRNA upstream 143871 1184267 ~ 1184799 (-) True G2341059
trnat-ugu-120 mRNA downstream 312 1005540 ~ 1005611 (-) True trnat-ugu-120
LOC110514453 mRNA downstream 57807 938871 ~ 948116 (-) True LOC110514453
trnaa-ugc-262 mRNA downstream 83897 921955 ~ 922026 (-) True trnaa-ugc-262
trnat-ugu-119 mRNA downstream 84640 921212 ~ 921283 (-) True trnat-ugu-119
trnaa-ugc-261 mRNA downstream 86074 919778 ~ 919849 (-) True trnaa-ugc-261
LOC118947143 mRNA upstream 893 1041289 ~ 1043295 (-) True LOC118947143
XR_005041795.1 mRNA upstream 12829 1053225 ~ 1053343 (-) True LOC118947154
trnaf-gaa-186 mRNA upstream 19677 1060073 ~ 1060145 (-) True trnaf-gaa-186
trnai-aau-177 mRNA upstream 19832 1060228 ~ 1060301 (-) True trnai-aau-177
trnai-aau-178 mRNA upstream 21380 1061776 ~ 1061849 (-) True trnai-aau-178
TU2680708 other downstream 76791 878809 ~ 929132 (-) True G2340951
TU2680652 other downstream 191268 806890 ~ 814655 (-) True G2340905
TU2679989 other downstream 889207 116167 ~ 116716 (-) True LOC110514508
TU2679952 other downstream 942785 62414 ~ 63138 (-) True G2340407
TU2680848 other upstream 118202 1158598 ~ 1164054 (-) True G2341053

Expression Profile