RNA id: TU2680779



Basic Information


Item Value
RNA id TU2680779
length 797
lncRNA type read_through
GC content 0.38
exon number 2
gene id G2341006
representative False

Chromosome Information


Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 1005923 ~ 1040396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtattcagacccctctgaatacttgcagacattttcattttactcaccttttgtctcttccacaatgttattcctcactcctacagtgaccATCACAATTgcatgcacatggacaattatgcaatttaggtgatgacatcatttagcaacttctagcgacttttaggacagccaatagctactttccttactgaggtgttggcaacactgctaactttaaacattggctatctgagcagctaactgatcgctgaagctgtacaaagcctttctgtaaatagcccacccaatctacctacctcatccccatattgttttaatatactttctgctctttgcacacctgtatttctatttgcatatcatcatctgttcatctatcactccagtgttaatttgctaaattgtaaatacttcgatactatggcctatttattgccttaccaccatttgcacgcactgtatatagactttcttttttttcttctattgtgttattgactgtacgcttgtttattccatctgtaactctgtgttgttgtttgtgtagcgctgctttgctttatcttggccaggtcgcagttgaatatgaaaacttgttctcaactagcttacctggttaattataggtgaaatttaaaaaaaataagaaacatttttttctttcccagaaaggggatgtagctcagtggtagagggcatgctttgcatgtatgaggtcctgggttcaatccccagcttctccattaaagtttttgcaatggcccatctcctactttccagaatgttgaaattct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2680706 lncRNA downstream 16174 876032 ~ 992003 (-) True G2340949
TU2680734 lncRNA downstream 72913 933491 ~ 935264 (-) True G2340974
TU2680725 lncRNA downstream 87079 917005 ~ 921098 (-) True G2340968
TU2680636 lncRNA downstream 188551 811254 ~ 819626 (-) False G2340897
TU2680810 lncRNA upstream 45680 1058805 ~ 1115633 (-) True G2341021
TU2680814 lncRNA upstream 46732 1059857 ~ 1064279 (-) True G2341025
TU2680808 lncRNA upstream 55456 1068581 ~ 1074200 (-) True G2341020
TU2680824 lncRNA upstream 104636 1117761 ~ 1120758 (-) True G2341032
TU2680854 lncRNA upstream 171142 1184267 ~ 1184799 (-) True G2341059
trnat-ugu-121 mRNA downstream 490 1007616 ~ 1007687 (-) True trnat-ugu-121
trnaa-ugc-263 mRNA downstream 1954 1006152 ~ 1006223 (-) True trnaa-ugc-263
trnat-ugu-120 mRNA downstream 2566 1005540 ~ 1005611 (-) True trnat-ugu-120
LOC110514453 mRNA downstream 60061 938871 ~ 948116 (-) True LOC110514453
trnaa-ugc-262 mRNA downstream 86151 921955 ~ 922026 (-) True trnaa-ugc-262
trnat-ugu-124 mRNA upstream 719 1013844 ~ 1013915 (-) True trnat-ugu-124
trnaa-ugc-267 mRNA upstream 1331 1014456 ~ 1014527 (-) True trnaa-ugc-267
trnat-ugu-125 mRNA upstream 2795 1015920 ~ 1015991 (-) True trnat-ugu-125
trnaa-ugc-268 mRNA upstream 3407 1016532 ~ 1016603 (-) True trnaa-ugc-268
trnat-ugu-126 mRNA upstream 4871 1017996 ~ 1018067 (-) True trnat-ugu-126
TU2680708 other downstream 79045 878809 ~ 929132 (-) True G2340951
TU2680652 other downstream 193522 806890 ~ 814655 (-) True G2340905
TU2679989 other downstream 891461 116167 ~ 116716 (-) True LOC110514508
TU2679952 other downstream 945039 62414 ~ 63138 (-) True G2340407
TU2680848 other upstream 145473 1158598 ~ 1164054 (-) True G2341053

Expression Profile