RNA id: XR_005041798.1


Basic Information

Item Value
RNA id XR_005041798.1
length 352
RNA type mRNA
GC content 0.34
exon number 3
gene id LOC118947551
representative True

Chromosome Information

Item Value
chromosome id NW_023493667.1
NCBI id JAAXML020000535.1
chromosome length 1125905
location 471113 ~ 471659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCATTTATAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTATAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACTGTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACTGTCGATTTCATTTAGAAAGGTAACTGTCGATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCATTTAGAAAGGTAACACAGGCCTCTATTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2681318 lncRNA upstream 781 469947 ~ 470332 (+) False G2341410
TU2681319 lncRNA upstream 781 469947 ~ 470332 (+) True G2341410
TU2681313 lncRNA upstream 23096 447485 ~ 448017 (+) True G2341407
TU2681306 lncRNA upstream 27749 442757 ~ 443364 (+) True G2341406
TU2681296 lncRNA upstream 54014 416539 ~ 417099 (+) True G2341397
TU2681326 lncRNA downstream 6420 478079 ~ 480273 (+) True G2341413
TU2681430 lncRNA downstream 17778 489437 ~ 490841 (+) False G2341491
TU2681431 lncRNA downstream 17778 489437 ~ 491365 (+) True G2341491
TU2681427 lncRNA downstream 23185 494844 ~ 502604 (+) True G2341490
TU2681433 lncRNA downstream 25162 496821 ~ 497176 (+) True G2341492
XM_036972445.1 mRNA downstream 497188 968847 ~ 1010664 (+) False gtf2e2
XM_036972442.1 mRNA downstream 499777 971436 ~ 1010665 (+) False gtf2e2
XM_036972441.1 mRNA downstream 499778 971437 ~ 1010665 (+) False gtf2e2
XM_036972446.1 mRNA downstream 500182 971841 ~ 1010665 (+) False gtf2e2
XM_036972444.1 mRNA downstream 500201 971860 ~ 1010665 (+) True gtf2e2
TU2680896 other upstream 362802 29995 ~ 108311 (+) True G2341098
TU2681682 other downstream 306457 778116 ~ 778928 (+) True G2341682
TU2681856 other downstream 577143 1048802 ~ 1071163 (+) False G2341808
TU2681860 other downstream 577143 1048802 ~ 1071163 (+) False G2341808
TU2681864 other downstream 577143 1048802 ~ 1071163 (+) False G2341808
TU2681853 other downstream 598684 1070343 ~ 1071163 (+) False G2341808

Expression Profile