RNA id: TU2685572


Basic Information

Item Value
RNA id TU2685572
length 469
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2344316
representative True

Chromosome Information

Item Value
chromosome id NW_023493672.1
NCBI id JAAXML020000394.1
chromosome length 888553
location 53789 ~ 54257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacggtatgtagactagctgggatctagtgtctctacagtatgtagactagctgggatctagtgtctctacagtatgtatactcgctgggatctcgtgtctctacagtatgtagattagctgggatctcgtgtctctacggtatgtagactagctgggatctagtgtctctacagaatgtagactagctgggatctagtgtctctacagtatgtagactagctgggatctagtgtctctacagtatgtagactagctgggatctagtgtctctacagtatgtagactagctgggatctagtgtctctacagtatgtagactagctgggatctagtgtctacATTATATAGATTAGTTGGGATctagtgtctacagtatgtagattagttgggatctagtgtctctacagtatgtagactagctgggatctagtgtctctacagtatgtagattaGTTGGGATCTAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2685540 lncRNA upstream 18535 34606 ~ 35254 (+) True G2344296
TU2685536 lncRNA upstream 22620 30906 ~ 31169 (+) True G2344294
TU2685581 lncRNA downstream 20664 74921 ~ 75235 (+) True G2344323
TU2685584 lncRNA downstream 35771 90028 ~ 90548 (+) False G2344326
TU2685585 lncRNA downstream 35771 90028 ~ 90548 (+) True G2344326
TU2685586 lncRNA downstream 41443 95700 ~ 96149 (+) True G2344327
TU2685562 lncRNA downstream 43367 97624 ~ 99500 (+) True LOC110534600
XM_036972587.1 mRNA downstream 77133 131390 ~ 136173 (+) True LOC118947670
XM_036972591.1 mRNA downstream 586875 641132 ~ 654704 (+) True LOC118947671
XM_036972592.1 mRNA downstream 602493 656750 ~ 674399 (+) True LOC110514819
XR_005041871.1 mRNA downstream 624180 678437 ~ 687027 (+) False LOC118936626
TU2685565 other downstream 1689 55946 ~ 60300 (+) False LOC110534600
TU2685561 other downstream 33506 87763 ~ 97825 (+) False LOC110534600
TU2685720 other downstream 396233 450490 ~ 450970 (+) True G2344439
TU2686095 other downstream 624727 678984 ~ 686705 (+) True LOC118936626
TU2686141 other downstream 704356 758613 ~ 759500 (+) False G2344761

Expression Profile

TU2685572 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU2685572 Expression in each Bioproject

Bar chart with 16 bars.
TU2685572 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.