RNA id: TU2685845


Basic Information

Item Value
RNA id TU2685845
length 764
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2344544
representative True

Chromosome Information

Item Value
chromosome id NW_023493672.1
NCBI id JAAXML020000394.1
chromosome length 888553
location 277305 ~ 278139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagagggggagaagagagagagagagagagggagagcgagagagagagagagatgtgtggcaGTCCTAAGAGCATGGGAACCCAGTCTATGTTCTAACAAGGCTGATTATTTACAGTTGAGGACATCCACTCTTTGACCTACTTCATCTGTGGTGCCTTAATGGACCAGAGGCTAACGCTAGCAGTCACATGTATATTAATGGACTAATGCTAACGTCACTCTCTATATTAAGATCAGTTGCAGAGAGTTGCAGAAGTGTAATATGGGATGAGACATGAATACTGTATATAACAAACAAGGCTCTGATTGGATAGGacccatatactgtatataacaaaCAGGGCTCTGATTGGATGGGACATGAATACTGTATATAACAAACATGGCTCTGATTGGATGGGACATGAATACTGTATATAACAAATAAGGCTCTGATTGGATAggacctgtatactgtatataacaaaCAAGGCTCTGATTGGATAggacctgtatactgtatataacaaaCAAGGCTCTGATTGGATAggacctgtatactgtatgtaacaaacAAGGCGATCCTCGTTAGATAAAAACCctggtgtgtgtttgttatgTAGGGGTGTCCTTGAGTATGTAGGTtcagggagagagggagatggagagagaggtacagggatagagagagagggagatagagagagagagatagagagagggggaggtagatagagacagacagagggagagagggagatggagagagaggtacagggat

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2685842 lncRNA downstream 11544 262342 ~ 265761 (-) True G2344542
TU2685785 lncRNA downstream 42372 234734 ~ 234933 (-) True G2344492
TU2685835 lncRNA downstream 42813 234017 ~ 234492 (-) True G2344537
TU2685834 lncRNA downstream 43822 233273 ~ 233483 (-) True G2344536
TU2685781 lncRNA downstream 46839 230038 ~ 230466 (-) False LOC110519864
TU2685837 lncRNA upstream 12310 290449 ~ 366938 (-) True LOC110519864
TU2685866 lncRNA upstream 25003 303142 ~ 306407 (-) True G2344559
TU2685874 lncRNA upstream 45127 323266 ~ 323858 (-) True G2344567
TU2685895 lncRNA upstream 83654 361793 ~ 363226 (-) True G2344588
TU2685897 lncRNA upstream 87044 365183 ~ 365590 (-) True G2344590
XM_036972589.1 mRNA downstream 235859 170 ~ 41446 (-) False LOC110534599
XM_036972590.1 mRNA downstream 242004 170 ~ 35301 (-) False LOC110534599
XM_036972588.1 mRNA upstream 416653 694792 ~ 819312 (-) False LOC110517917
TU2685800 other downstream 111196 165388 ~ 166109 (-) True G2344505
TU2685745 other downstream 207762 67053 ~ 69543 (-) True G2344464
TU2685546 other downstream 240910 31211 ~ 36395 (-) False LOC110534599
TU2686263 other upstream 462364 740503 ~ 747999 (-) True LOC110517917

Expression Profile

TU2685845 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU2685845 Expression in each Bioproject

Bar chart with 14 bars.
TU2685845 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.