RNA id: XM_036972703.1


Basic Information

Item Value
RNA id XM_036972703.1
length 4927
RNA type mRNA
GC content 0.57
exon number 32
gene id LOC110517267
representative False

Chromosome Information

Item Value
chromosome id NW_023493676.1
NCBI id JAAXML020000344.1
chromosome length 856417
location 462273 ~ 844971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTACATACTGGAGCTGTCTGAGAACAACTCTCCATGGAAGGTGTACACGTCGGAGGTGGGGCCTGCTGTGACACAGGTGTCGGTGGGCGGGCTCACCCCTGCCAGGACCTATCAGTTCAGACTCTGTGCTGTCAATCAAGTGGGCCGCGGCCAATACAGCGGCGAGACACAGAGGTTgatgctgagagaggaggctccCAGCGCTCCTCCTAAGAACATGGTGGCGTCGGGTCGTACCAACCAGTCTATCATGGTCCAGTGGCAGCCTCCCCCAGAACCGCAGCACAATGGACTGCTCCGAGGATACGTCCTCAGgtatcgTCTGGCAGGTCTACCAGGAGAGTACCAAGAGAAGAATATCTCTAGTCCAGAGACAAACTACTGTCTCCTATCAGACCTCATAATCTGGACTCAGTATCAGATACAACTGGCTGCCTACACTGCTGCAGGCTTGGGGGAGTATAGTACTGCTGTTACTGAGTACACACTACAGGGTGTCCCCACAGCGCCCCCTCAGGCTGTAGAGGTAACAGCAGTCAGCTCCTCCGCTATCAGATTCACCTGGAACCCTCCGCCTCAGCAGTTCATCAACGGGATCAACCAGGGATACAAGttgCTAGTCTGGCCAGAGCACTCCCCCGAGGCTGTAACCATAGTGACCATCACCCCCGACTACCCCGGTTCCCGCCTCACCGGATTGGTTGTTGGACTAAGGAAGTTCACCTGGTATCTAGGCTCCACCCTCTGCTTCACCACGCCCGGCGATGGACCCAAGAGCCCTcccatactactacagacacacGAAGACActccAGGTCCGGTGGGTCACTTGAGCTTCACTGAGATCCTGGACACGTCTCTGAGGGTGAGCTGGGCAGAGCCTAAAGACAAGAACGGCATCATCACAGgtTATGTGATATTGTGGTGTGTTTCTGGGTCAGCATCGGGGTCAGGGTCGGAGGGCAATGCCTCCTGTGAGGAGCGAGCTCTCGCTAACTCTACCCTGCAATACAAGGTCACCAGCTTGACCTCTATGACATCATACGCCCTGGAGGTCGCCGCCATGACAGCGGCGGGAAGAGGCGtggccaccacctccaccatctcctctgGAGTTCCACCAGAGCTTCCTGGTGTGCCTTCTAACCTGGTCATCTCCAACATCAGCCCTCGCTCCGCCACACTAAGGTTCCGCCCAGGCAGCGATGGGAAGACGGTCATCTCCAAATGGATCGTAGAAGGACAGgtggtgagagagaggggtggagagagggatgggaaggaggaggagtggagagtcgtgtatgagagagagaacagagagaagcagcCTGATGTCGACTCAATGGAAATACCAGACCTCCTCCCCTTCACACTGTACAGgttccGATTGCGCCAGGAGAACATTGTGGGCTCCAGTCCCTCTAGCACCCCCTCCAGGATGATTCAGACACTGCAGTCGGCCCCTGACACACCCCCTAACAACCTCACCCTGGTTACAGCCACACAGACCAGCCTCACACTACGCTGGGCGccgTTACCGGTTTCTGAGTATAATGGTAGTCCAGAGACGGTGGGTTACCGGGTGTGTGTCCGGCGGGCAGACGgccggggagaggagaggatggaggaggtggCGGAGGTCAGAGgacaggggtcaggggttagtggTCAGCAAAGCGAGACGATGCTGGAGGGCCTGGCTGAATGGACGGACTACCAGTTGAAGATACAAGCCTTTAACTCCATAGGAGCAGGGCCATGGAGTAACACACTGACCACACACACCAAGgagtcagtgccgTCTGGCTGTCCAGTGAATGTGAGTGTGGAGGCGGTGAGTTCTACCAGGATTTTGGTCACATGGTCTCCTGTTCCCGAGATGCAGAGAAACGGACCCATCCTAGGttacaagGTGTTGTACGCAGTGAAGGATTGTGTGGGCGCCCCCTCAGTGTGGTCAGTCCCAGGGGAGAGGAGTGTTTCTGTCCTCCTGGGGGAACTACTGAAGTACACAGTCTATCAGATACAGCTGGTAGCATTCACACAGCTGGGGGACGGACCACCGAGCCCCAGAACACTACACAGGACCAAGGACGAcgttCCAGGTCCTCCAGTGAGGCTGTTGTTTCCAGAGGTTCGTCTGACGTCTGTCAGGGTGGTGTGGCAGCCTCCTACTGACCCCAATGGGATTATCTTGGGTTATCAGATAGCGTACCGTCTGGATGCCGGCGACCCCATGCGGTTCACTACGGTGGAGGTGGGGTCGACCGCGCGTCAGTTTACAGTCAGCAGTTTGACCGGAGACCAGGCCTATGTGTTCAAGTTGACCGCTAGGACCTCTCAGGGATGGGGCAGAGCTCAGGAAGCTGTAGTTATCACCACCGAACGCAGAGagCGTCCCTCTCCCCCCAGGAAGTTGTCCGTCCCCCAGGGGGAGATCCAATCTCGTAGGCTCCGCCTCCACTGGGTTGCCGGGATGACAGGCTCCTCCCCCCTACGGTACTACTGCCTGCAAACCAGAGAGCTTCCGACCGGAGACTGGACCAGTCACTCTGCTGATATACCACACAATTATACAGCCTGGACCGTGGAGAGACTGAAACCCTTCACGTCGTACAAGCTGAGGATGCTGGCAACCAACGATGTAGGAGACAGCAACTACAGCAAAGAGACGGAGACTGTTATCACACTACAGGATGtTCCTGAGGAGGCTCCAGTGATAGTATCAGTTAAACCCTCTACTACTACCTCTGTTCTGGTGCAGtggcagCGTCCCAGTGAGGAGAGCGTTAACGGGGTGCTGGTTGGCTACCGGCTGTACTACCGGGAACTCCCGGTAAACTCCACCCCTAGTACGGTACCCCTGGAAGACATggccaacaacaccaccacacgtGGTGACATCACTGctctgacCAGCTTTAAGACAGTGAGCAGTGCTTCCTTAACAGAATTTGAGTTAACGCAGCTGAAGAAGTTTAAGTGTTATGAGATCGTCATGACAACCTATAACATCGTAGGAGAGAGCCCACCCTCTGAGCCGGCCACTGTATCAGTTGGAGAAGCagctccctccTTGCCACCCCAGTCTATCAGAGTGGTGCCTGTCTCTCCTACTGTACTGGAGGTGACCTGGGACCtcccacccctacacacacagaaTGGACTCATCCAGGGTTACAAGATCCACTACTGGCAGGGGGACAGACAGAACGAGACAGAGAAGGTGACGGTGGTGTTTGTTCCTGACACGCGTGTTCGTCTGGTCAACCTCACGTGTTACACGTCCTACCTCGTCACGCTGTCTGCCTTCAACGTGGCTGGAGACGGCCCGCCCAGCGAACCCCGGGGCGCCAAGACCCTACAGGCTGcCCCCAGCCAGCCTAGTTTCCTGTCGTTTTCGGAGGTGACAGGATGGAGTGTCAACGTCTCCTGGGGGGCGCCCAGCGCTTCTAACGGGGTAGTGGAGGGGTACAGAGTGGTCTACCAACCCACACAGCCTGTACAgggtgtgaGTCGGGTGGTGACGGTGGAGGTGAAGGGTAGCTGGCAGCGTTGgttgaaggtcagagacctgactaaAGGAGTAATCTACAGGTTCAGTGTCCAGGCCAGAACAGTCAGCTACGGACCTGCTGCCCACTGTAACGTCACCTCACAGCCTCTACAGGgcaCCCCTGGTTCGCCCATGGAGATGTCAGTCACCAAGTCCTCCTCGGCGCTGACCATTCATTGGTCGGAGGGAGACGCGGGGGCGGGACCTGTCATAGGTTACATCATCGAGGCTCGTCCCTCAGaTGAAGGGATGTGGGACTCGTTTGTCAGGCTCCTCCCCCCCAGCAGTAGGTCAGTAACCGTGGAGATGGACCGTCTGAGGTCAGGGGTCGGATATGAGTTCCGTGTCATCGCTGTCAATCGCTACGGTTATGGGGAACCCAGCACGCCGTCCACCGCGCTcgctgCTCTGTGGGACCGTCCCTTCTATGAGGAGTGGTGGTTCCTGTTGGTCCTGTCTCTGATTGGTCTGATCATGATCCTCATGTTGGTGTTCAGCCTCCTGCTGCACGGACACAACCACAAGTACAGGAGCTGcagcacaggaaagCATGTGTCTACGGTGGAGGAGTCCGTAACCCTGGACAACGGAGGATTCACAGCTCTGGAACTCAACAGCAGAACTCTGAACAACAAGAGCAACTTCCACAAGAAGAATGGAActaggtccccTCCCAGGCCCAGTCCAGGCCTCCTCCACTACTCTGATGAAGACCTGTGTGATAACTACAACAATGGAGCCATCCTCACAGAGAGCACCACACtcacagagaaacctgctgacatcTCAGAGTCTGAGgtAACAGACAGTGACTGTGAGGATGATCATCATCCTAAACATTCCTTTGTTAATCACTACATGTCAGATCCCACCTACTATAACAGCTGGAAGAGACAACCTAAAGGCCTGAAGGGGTTAAGCCCGGCGTCCGGCTACGAGGAGTGTTCCAGCGCTGACGGGGCAGAGCCCTACTACCAGACCGTGgtcacacagcacagcacaggggGAGCGTACACGCCCACTGGGCtgcccgcgcacacacacacactcccactcccacacacactcccacacacacacacgcacgccaaCCCCAATACTAATCCACCAGGCTCACGCACGCCCGTCACGGGGTTCTCGTCTTTTGTGTGACTCgtgcacacatgcgcacacacacacacacacacgcgcgcgcgcgcgctcacacacacacacagagggcggAGCGGAGGAGGTTTGGAGCCCACTACTGTGgtaggacagagggatggagggagaagggtggaagaggatgttgggaggaaggagggagaggaggatgggagagaggaggatgggagagaggaggatgggagagaggaggatg

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2689649 lncRNA downstream 336 459740 ~ 461939 (-) False LOC118947704
TU2689650 lncRNA downstream 336 459740 ~ 461939 (-) False LOC118947704
TU2689652 lncRNA downstream 336 459740 ~ 461939 (-) False LOC118947704
TU2689653 lncRNA downstream 336 459740 ~ 461939 (-) True LOC118947704
TU2689460 lncRNA downstream 14255 447685 ~ 448020 (-) True G2347121
TU2689745 lncRNA upstream 66885 658462 ~ 664432 (-) True G2347311
XR_005041884.1 mRNA downstream 307 461186 ~ 461968 (-) False LOC118947704
XM_036972726.1 mRNA downstream 4720 453119 ~ 457555 (-) False LOC118947717
XM_036972727.1 mRNA downstream 4720 453119 ~ 457555 (-) True LOC118947717
XM_036972710.1 mRNA downstream 30132 429659 ~ 432143 (-) True LOC118947711
XM_036972725.1 mRNA downstream 36004 419741 ~ 426271 (-) True LOC118947716
XR_005041887.1 mRNA upstream 125659 717236 ~ 718347 (-) False LOC118947705
XR_005041885.1 mRNA upstream 125659 717236 ~ 718385 (-) False LOC118947705
XR_005041886.1 mRNA upstream 125659 717236 ~ 718394 (-) True LOC118947705
TU2689247 other downstream 180083 281003 ~ 282192 (-) True LOC118947714
TU2689778 other upstream 164612 756189 ~ 765433 (-) True G2347341

Expression Profile

XM_036972703.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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XM_036972703.1 Expression in each Bioproject

Bar chart with 11 bars.
XM_036972703.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.