RNA id: XR_005042040.1


Basic Information

Item Value
RNA id XR_005042040.1
length 156
RNA type mRNA
GC content 0.57
exon number 1
gene id LOC118947897
representative True

Chromosome Information

Item Value
chromosome id NW_023493683.1
NCBI id JAAXML020000310.1
chromosome length 673672
location 617173 ~ 617328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2693279 lncRNA downstream 6622 610347 ~ 610551 (-) True G2349765
TU2693278 lncRNA downstream 7274 609593 ~ 609899 (-) True LOC118947866
TU2693251 lncRNA downstream 11924 604110 ~ 605249 (-) False G2349746
XR_005042039.1 mRNA downstream 1728 615290 ~ 615445 (-) True LOC118947896
XR_005042038.1 mRNA downstream 3611 613407 ~ 613562 (-) True LOC118947895
XR_005042020.1 mRNA downstream 5494 611516 ~ 611679 (-) True LOC118947877
XR_005042009.1 mRNA downstream 7419 609591 ~ 609754 (-) False LOC118947866
XM_036972919.1 mRNA downstream 144093 375895 ~ 473080 (-) True LOC110513598
XR_005042031.1 mRNA upstream 1761 619089 ~ 619252 (-) True LOC118947888
XR_005042035.1 mRNA upstream 3686 621014 ~ 621177 (-) True LOC118947892
XR_005042036.1 mRNA upstream 5611 622939 ~ 623102 (-) True LOC118947893
XR_005042041.1 mRNA upstream 7528 624856 ~ 625019 (-) True LOC118947898
XR_005042042.1 mRNA upstream 9445 626773 ~ 626936 (-) True LOC118947899
TU2693245 other downstream 10919 602757 ~ 606254 (-) False G2349746
TU2693246 other downstream 10919 602757 ~ 606254 (-) False G2349746
TU2693249 other downstream 10919 602757 ~ 606254 (-) False G2349746
TU2693243 other downstream 11924 602757 ~ 605249 (-) False G2349746