RNA id: TU2694547


Basic Information

Item Value
RNA id TU2694547
length 1618
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC118947907
representative False

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 513606 ~ 522862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACGATGGTCCAACCTCCACCCCCTTCACCCCTCTATCCTCCTTCCACTCTGGCTCCCTCCCTCGCCCCACCAGGCCGGCTCCGAAGCCACGCTCCCGACCTACAGTTCCCCCGCCCCGTCAGCCGCCCACCAATGACGACAGCAACGGGCCCAGCGGCTCTGCCTCCAAGGTCATCACCGATGCCAGCCTGAACTTGAAGGGGATTGGCCGAGCCCTTATCCCTGAAATTATGGTGGACATACAAGGGGAGAGCTCTGCTGGTCATGAGCCCTCCCCCTATCCAACCCCACCCTTGGACCCTGAGATCCAATCAGAGAGCACCAGTCTGTGAAAGCGGGAGGGATCACTCCAACTGACATCACCAAAAAACATTCTGCCTCTGCCCAATTGGTCAATATGCTAGCCATTCATCCAATCGCCGTAGTCGGAGTCAGCTCTGAGCCTCTACAGACTGGACCATACAAACTCCCTGCTCATCAATCCAGTGAGCAATAGTGTCTACAACAAACAACCCCTAGCCAACATTACTCTCTACAACAATACAGGGACTAGACAACCTTCTCTTACTCCATAATCCAAACTCAACACTGTTGGCACCCACCACCCAACACCCTCAACATCAACACCCTTCCATCCATAAACCATCAACAGTATTGGAACTGGACCACAGGATCACCCCATGTTCATTGAACCTTCAACCTGCTAAACATGATAGGAAGTTGGCCTGCAGCTAGAGATGCCACTGTAGCTTTCTATTGAATCAACCAAGCCTGTACTGGGActggacaatatatatatatatatatattaaaatatataacCACTGAACTCCAATGCTGGTGAAGCTGTAATGTTATGACCCAGTACCTGGAAGCATCTGATGCAAATCTGAATATACTGTTTCATCTTTGGATCCATTGTAGAATGTTGACATTGATTTGGGGCTGGGTGGGAGGCTAAGCTTGTAAACCTAAAAGCTCAGAACTTGTATGATGTAACGTTCCTCCCTGTGGTACATTGTATGGTGGTTGTAGGAATATTCTTTGAATGGAAATTGCTCATTTGTATGTCCTCAATGCATTACCTAAGATTGTCTACAAAACTGCAATTTTGCCCCATTTGAGAACTTTCTTTAATGGTTTTTAATGGGCCAAGTAATACAAATGTAATGCAGAAAGTGCTATTGATGAGCAAATATACATGGTGAGCCCAAAGAATCCTATAAATTGCCATACTTGATTTGATGAGAGCTCTCAAGGACCAAAGATGCCAGTTGATGAATAAGTACATTTGGTGAGTGTGCTGCTTTGTGTTTGTAAtataatgttttaatagttgccaAGGACCAAATAAGTATCAATGAGGAGTGCAATTTAATTAACTGCATTCGTTTCATACTGTCTTCTCCACTCCCAATATTCACCCTGtttcatttgttgttgtttttaacctTTCTTACCGCAATATACTATAGCACTGTGTTTTATTCAACAGAGCTGAATTCAAACAAAACAGTCACCCCTGCCAAAAATGTGTATACCAAtcacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2694530 lncRNA downstream 9508 494015 ~ 506260 (-) True G2350656
TU2694498 lncRNA downstream 78457 437005 ~ 437311 (-) True G2350625
TU2694496 lncRNA downstream 80099 435389 ~ 435669 (-) True G2350623
TU2694495 lncRNA downstream 80740 434782 ~ 435028 (-) True G2350622
TU2694490 lncRNA downstream 91298 423865 ~ 424470 (-) False G2350618
TU2694561 lncRNA upstream 19330 540161 ~ 540765 (-) True G2350679
TU2694568 lncRNA upstream 34827 555658 ~ 557973 (-) True G2350686
TU2694575 lncRNA upstream 48846 569677 ~ 570285 (-) True G2350691
TU2694589 lncRNA upstream 68443 589274 ~ 589871 (-) True G2350705
TU2694591 lncRNA upstream 80259 601090 ~ 601329 (-) True LOC110486817
XM_036972966.1 mRNA downstream 97248 400904 ~ 418520 (-) True LOC110486835
XM_036972965.1 mRNA downstream 97866 400904 ~ 417902 (-) False LOC110486835
XM_036972967.1 mRNA downstream 114938 389054 ~ 400830 (-) False LOC118947904
XM_036972968.1 mRNA downstream 114938 389054 ~ 400830 (-) True LOC118947904
XM_021558667.2 mRNA downstream 132126 382082 ~ 383642 (-) True LOC110486843
XM_036972991.1 mRNA upstream 2491 523322 ~ 568570 (-) True LOC110486820
XM_036972978.1 mRNA upstream 72625 593456 ~ 604197 (-) False LOC110486817
XM_036972979.1 mRNA upstream 72625 593456 ~ 604197 (-) False LOC110486817
XM_036972982.1 mRNA upstream 83622 604453 ~ 607145 (-) True LOC110519423
LOC118947905 mRNA upstream 93364 614195 ~ 623434 (-) True LOC118947905
TU2694554 other downstream 5159 509912 ~ 510609 (-) True G2350673
TU2694492 other downstream 86207 428251 ~ 429561 (-) True G2350619
TU2694447 other downstream 184431 330712 ~ 331337 (-) True G2350578
TU2694442 other downstream 185131 327477 ~ 330637 (-) False G2350576
TU2694541 other upstream 13408 534239 ~ 535381 (-) True G2350665

Expression Profile