RNA id: TU2694045


Basic Information

Item Value
RNA id TU2694045
length 4187
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2350270
representative False

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 127647 ~ 131922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTAAGTTGTAATCAAGTAGGGGAGTTTGATCATAAACACCTGAAGAACTGAAGCTTGGTTTTATCATTCTTTTAGAAAAACCAAACACTTGTGTGTATGACAGGGATGATGTGTTGGAGGCTGACAGGGTACACTTTAAGAAAATAAGGTGCTACCTAGAACCAGAAAAGGTTAATccgttgtccccataggagaacactttgaaAATAACTATTTTTGGTACCAAGTAGAACCCTTCCACTAATACCTTTCCACTAAGGTTCTATGTGGAACATTTTCACCACTGACAAGTTCTTAGTAAAACCTCTTTCACtccaaagggttctaccttgaaccaaaaagtgttatctATGGGGACaaacaaagaacccttttagttgTAAAGGTACAGAGACATGCGTGCTGCTGCCTGGGTTCACTGCAGACTGAGGCTGCGTACCAAATTgcactctgttccctatatagtggactacttttggcCATGGACCCTGGTGAAATTgaatgcactataaagggaatagggtgctacagCAGCTAGAGGGTTAAAAGTAGAGCGGTGTGTTCTGCTGCCAGGGTCCActgcaggcagacagagacacagcctaCTACTTTaagctggctgtctgtctgccggTGAACATTGGCTCTGAGGGGAGCAGAGCTAGAAATGATTTGTGAGCTCAGTGtgctgtttcccaaatggcaccaattGGGCTCTGgacaaacgtagtgcactatatagggaatagggtgccatttgggatgtcgATCAGTGTTCTGCATCCATTGCGGCTTCTTCTCACAGAAGCCATGACCTCCAAGACGCCTTGTCTAGGGAGCATTTAGAAAACATTTGTCTCTCAATTTAGAACAGCTTTCTGAATGAAATAGAAGGGAAAGCGTGTCATGGTGGGTTAGAGATGAAGCTGTGGGGTTTctggctgagagaagggaataaaAGGTCTATATATGTCAAATATATCTctgcttaaaggggcaatctgccatAGCGACATCCGTTATTATTTTGATTCATTCCCATTGAAATGCCTCATTAGCTTGGTTCAACTGTCATAccacatcagaacccaaaatataagcttttttttactccacaatgtaattgtaaacaaacactgtatatcctcaaaacatggttaaaactatcattgaTCTAaaggatggccagtccttgcatccatagctctgttgtcacgactccgaccgaaggacactccccttcccgttcgggtggcgcttggcggtcgtcgtcgccggcctactagctgccactgattatttcctccccccccttatgtgtttattgattgcacctgttttgagttaggtAGTTAGTAGtaaggctttattagtcagccggcccgcatggttccttgtgcgggattaattattgtgcaGTCGGTTTGGTGTACGTGGGTGCACATCTATGGGTTGTGTGTTTTCCCATTTTGTGGGGTTTtcctggacagtttaagtccccttgtttggggcatttgtttgctcgtttacgccctgtgttttcgtgagggttggcttatgttcgccgttttctctgtgcattaaaatagcacttccctgaactctctgcttcctgcgcctgactcctcacccactacactcagaccGTTACATCTGTCTACACATTGAGAATAGTCACATATTGTATCTCGAGTCTCATCCCTTAGCTGTTTACCAAATCAGTGGCAGGGTgttcctttgttgttgtttgaactcCAGATTGCCTCTTTAATAACTCTATGACTACGTGCTCACAGCAAAACAGCAATGGTTAGGCCTTGTAGAAAatatgtattatactgtacctgtcaGAGAACCTAGCACAAAACAATGGGTTCGGTGCTTAGATGGGTGAGAACAAGGGGTGTTTGTGTTTAGATGTACTTGAATCTGTCAGCACAGAACATTACTGCTTTGTAGCTATTGATATCAGTACCTATACATCAGTGTTCCCCAAAAACAGAGCATGCCTGTCGCTTGTTGACTGAAAATCACTACAATTTAACTTGTTCAGCTGGCTATAATACTTTGAAGATAATTCATTCTGCAACAACTGTCCTGTGTCAATAGAAAGAAAGGAATTTATCACAACACCCTTGAAACATTCTCACACTTCATCTTTTGCTTTGGAACTTTAAGTGAAACAgatgggaagagaggggggatagatagataattagacagtagagagggagagggagagggagagagagagagagagaatacaataTGAGGAGAGGTACACAATGGGAGATATTGCCATTCAGTGAAGACAATGTATCTGTCCAATAATCACTGTGGTGAGCTTGAATGTTTTGTGTTCAAGCTAGATTGGAAAGGATTGTTTGATGAAGCTACTATTGAACACAAAACAACATATCTATCATCTTCATAGGCCCATGTTTAAAACATACAAGTACTGTATACACGCTGTACATTCTAGGTTTCCTCTGTAAACAACAAGCAGCAGTGTAGCTCCCTAACTAATACAGTAGATCTGTGTACTGGCATTGCACTGGAGCTTCAATATGGTTTAATCCATTGATACATGTTAAATAAATACACATTGTTTGTAGCTGCCTGGAGGGGTGAACATTTACAATGCAACGTTCATTAAAGCATTAACTTATTTCATTACAAAAATGTAGAACGCTAGAGCGGAAATGTATATTAGACGTGTACAAGACAGCTCAAACTATATTAAATTACACAGAGTAGCAGCTCACTATGTTGCCATGTTCTTtagctctttctgtctctgtggtCATTTTATAGCAAAAGCCACATTTTAATACTGTACATTAtaggtgcgttcgtaaattcactttAGAGTGTCAGAGTGCACTCGGAGTGTGCTttgagtgtttgtaaattcagagtgttgtcagattgtccgttcataacttcagagtgtttcgatctcggagcgttcagagtgcacactggacactctggccgAGGTCTAGGGTTGATCTGAGCATTCTGACTTTACGGCCTTCAAGCTTTAAGCCAACTGGCTAAACTTGCTtagcttgcttgctagctacttccagacacaaatgagagaacacttcACTCTGAACATGTTACTCACCCTTGCAGAGCTGCTATTAGTGCTAGAGTGTTTTCATGTTATCAAGAGGGTTAGTGACTGTAACTGTGttactggcaacaatttaattcagTTTTTTAGCCGATGTTTACTTAAATCTGTCATAACAACTGAGTTTAGGCAGTTCGTAAATTCATAAAtgattctgcgctctggcactcTCCAACCAGAGTGTTCTGAATTTTGAAGTAAGTTGCCATGGTGAATTTACTAACGCACCCTATATCAGGGCAGTCCTCAAGTGCCACAGTGTCTGTTGCTTAGTAACGGATGATATGGACCAGGAGAGCGGACACTCTCTGCAATCAATGACAGAAATGTATCAGTTAAGGACCAAAGAAAGGAAAATCTGTGGCCCTCAAGGACTGCTCAGAGATCCTGCCTTACATCTTTATCTGTACACTTAAAACCAAGCAGTGTAGTGCAGTGTTTCCCCTTCTACTATTACTTAGGCGGGGTGCCCCACTCTCATTCATCTGTATCCTTAACTCTGTTGCCCCCACCACCAGCCTCAATTTAGTTTATCTTCAGTTGGATTCTATAAAAACATGTATGGTTTTAGCAGCCTTTGTTGAAGATTCCCCTGGTCTAGAGTAGTCTAGTCTGTTCTAATGGAGTCTACTACTAGTCTAAGGGCTCCATGGACTCTGGCTCTGTGTCCATACAGGTCTCCCAGGGGTTGATCTGGGCAGGTCTAATCTgatctactactactagtctaAGGGCTCCATGGAGTCTGGCTCTGCGTCCATACAGGTCTCCCAGGGGTTGATCTGGGCAGGTCTAATCTgatctactactactagtctaAAGGCTCCATGGAGTCTGGCTCTGCGTCCATACAGGTCTCCCAGGGGTTGCGTGGCATCTGGGGCATGGAGAGGATCAACAGGCTGAGACCACTGAAGACCAGGAGGACGAAGGAGGTGCAGGCACATTCAAACGACCAGGAGTAGTAGTACTGTTCCCAGACGGTCTCCTCGCTGTCAATCATCCGCTTGGTGGAGTTCCGCATCACCTCAACAGAGATGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2694042 lncRNA downstream 15938 111485 ~ 111709 (-) True G2350267
TU2694031 lncRNA downstream 37313 89985 ~ 90334 (-) True G2350256
TU2694028 lncRNA downstream 40068 86236 ~ 87579 (-) True G2350255
TU2694029 lncRNA downstream 41139 86216 ~ 86508 (-) False G2350255
TU2694011 lncRNA downstream 64019 63147 ~ 63628 (-) True G2350241
TU2694373 lncRNA upstream 75914 207836 ~ 208378 (-) True G2350524
TU2694408 lncRNA upstream 131224 263146 ~ 264239 (-) True G2350555
TU2694437 lncRNA upstream 183389 315311 ~ 315525 (-) True G2350572
TU2694439 lncRNA upstream 192769 324691 ~ 325272 (-) True G2350574
TU2694440 lncRNA upstream 193937 325859 ~ 326563 (-) True G2350575
XM_021558667.2 mRNA upstream 250160 382082 ~ 383642 (-) True LOC110486843
XM_036972967.1 mRNA upstream 257132 389054 ~ 400830 (-) False LOC118947904
XM_036972968.1 mRNA upstream 257132 389054 ~ 400830 (-) True LOC118947904
XM_036972965.1 mRNA upstream 268982 400904 ~ 417902 (-) False LOC110486835
XM_036972966.1 mRNA upstream 268982 400904 ~ 418520 (-) True LOC110486835
TU2694039 other downstream 26632 100617 ~ 101015 (-) True G2350264
TU2694442 other upstream 195555 327477 ~ 330637 (-) False G2350576
TU2694444 other upstream 195555 327477 ~ 328152 (-) False G2350576
TU2694445 other upstream 195555 327477 ~ 329664 (-) True G2350576
TU2694447 other upstream 198790 330712 ~ 331337 (-) True G2350578
TU2694492 other upstream 296329 428251 ~ 429561 (-) True G2350619

Expression Profile