RNA id: TU2694408


Basic Information

Item Value
RNA id TU2694408
length 988
lncRNA type intronic
GC content 0.37
exon number 2
gene id G2350555
representative True

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 263146 ~ 264239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGCATCTTGACCATTTTCCAAACTGGAATGAACCCACTCTGCTAAACTGTGTTCCTAGTCACATCTCTGATGATGAGTCAGTGACTCAGTTGATTGACTCTGATCTGTCAGTATTActacaagagaaagagaaagatgtgtgtgtttgagataaagagaaagatgtgtgtgtgtttgagataaagatgtgtgtgtgtttgagataaagagaaagatatgtgtgtgtttgagataaagagaaagatgtgtgtgtttgagataaagagaaagatgtgtgtgtgtttgagataaagagaaagatgtgtgtgtgtttgagataaagagaaagatgtgtgtgtgtttgagataaagagaaagatgtgtgtgtgtttgagataaagagaaagatgtgtgtgtttgagataaagagaaagatgtgtgtgtttgagataaagagaaagaacaaaacattttaaaaagaaagaaatagggagaaagagtgagggagagacaaagacagagaaagagagacagaagtaTACAGTATGCATGTTTGAGTATGAAAGAGCAGGTGGGCTTGCTTGTGCATgcagtgtgtatgttatcatgtgtctctgtgtgtggaagtGTGTGACTGATTGGGTCAAATCCAGGGCCAACTCACAGAAAGGGCATTAGTGAAGCAGAACGTGTATTTCAGACTCACCAGTGCGTTTAACAGCAAATTCAATTGTGATCTAAATCTACATAATGGAGAATCAAATATTCAATTTCACACAGTAATCATGTTCAACAGAGTGTGGAGATGGACTAACAGAGAAAATGGGATTGAAATGACACATGCAATAAAATACATTGCTCTTCTATGGCTAGAACCTGTGAGACCTATAATGTCTTAAAATCTTTATGTCCTCTTATGAGTGTTTTATGGAACCTCCATGTCCATACGGCAGCCCAttactgtgtacagtatgttttattccattctattctgatctattctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2694373 lncRNA downstream 54768 207836 ~ 208378 (-) True G2350524
TU2694045 lncRNA downstream 131224 127647 ~ 131922 (-) False G2350270
TU2694048 lncRNA downstream 131224 127647 ~ 131922 (-) True G2350270
TU2694042 lncRNA downstream 151437 111485 ~ 111709 (-) True G2350267
TU2694031 lncRNA downstream 172812 89985 ~ 90334 (-) True G2350256
TU2694437 lncRNA upstream 51072 315311 ~ 315525 (-) True G2350572
TU2694439 lncRNA upstream 60452 324691 ~ 325272 (-) True G2350574
TU2694440 lncRNA upstream 61620 325859 ~ 326563 (-) True G2350575
TU2694446 lncRNA upstream 64075 328314 ~ 329238 (-) True G2350577
TU2694490 lncRNA upstream 159626 423865 ~ 424470 (-) False G2350618
XM_021558667.2 mRNA upstream 117843 382082 ~ 383642 (-) True LOC110486843
XM_036972967.1 mRNA upstream 124815 389054 ~ 400830 (-) False LOC118947904
XM_036972968.1 mRNA upstream 124815 389054 ~ 400830 (-) True LOC118947904
XM_036972965.1 mRNA upstream 136665 400904 ~ 417902 (-) False LOC110486835
XM_036972966.1 mRNA upstream 136665 400904 ~ 418520 (-) True LOC110486835
TU2694039 other downstream 162131 100617 ~ 101015 (-) True G2350264
TU2694442 other upstream 63238 327477 ~ 330637 (-) False G2350576
TU2694444 other upstream 63238 327477 ~ 328152 (-) False G2350576
TU2694445 other upstream 63238 327477 ~ 329664 (-) True G2350576
TU2694447 other upstream 66473 330712 ~ 331337 (-) True G2350578
TU2694492 other upstream 164012 428251 ~ 429561 (-) True G2350619

Expression Profile