RNA id: TU2702235


Basic Information

Item Value
RNA id TU2702235
length 312
lncRNA type read_through
GC content 0.62
exon number 3
gene id G2356437
representative True

Chromosome Information

Item Value
chromosome id NW_023493702.1
NCBI id JAAXML020000555.1
chromosome length 476391
location 292279 ~ 387436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacacggtccttttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacacggtccttttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggtccttttgggtgaccaggtgcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2702239 lncRNA upstream 21098 302909 ~ 304470 (+) True G2356438
TU2702225 lncRNA upstream 63670 261352 ~ 261898 (+) True LOC118948670
TU2702226 lncRNA upstream 63897 261274 ~ 261671 (+) False LOC118948670
TU2702217 lncRNA upstream 85707 239514 ~ 239861 (+) True LOC118948682
TU2702216 lncRNA upstream 95581 203012 ~ 229987 (+) False G2356430
TU2702252 lncRNA downstream 7164 394600 ~ 398795 (+) False LOC118948646
TU2702253 lncRNA downstream 7164 394600 ~ 398795 (+) False LOC118948646
TU2702245 lncRNA downstream 7986 395422 ~ 399551 (+) False LOC118948646
TU2702247 lncRNA downstream 7986 395422 ~ 399551 (+) True LOC118948646
XR_005042133.1 mRNA upstream 2753 318885 ~ 322815 (+) True LOC118948644
XR_005042151.1 mRNA upstream 7058 318357 ~ 318510 (+) True LOC118948662
XR_005042174.1 mRNA upstream 7782 315951 ~ 317786 (+) True LOC118948685
XR_005042132.1 mRNA upstream 36042 285596 ~ 289526 (+) True LOC118948643
XR_005042149.1 mRNA upstream 40347 285068 ~ 285221 (+) True LOC118948660
XR_005042177.1 mRNA downstream 3030 390466 ~ 392301 (+) True LOC118948688
XR_005042155.1 mRNA downstream 5436 392872 ~ 393025 (+) True LOC118948666
XR_005042135.1 mRNA downstream 5964 393400 ~ 397330 (+) False LOC118948646
XR_005042178.1 mRNA downstream 22337 409773 ~ 411608 (+) True LOC118948689
XR_005042156.1 mRNA downstream 24743 412179 ~ 412332 (+) True LOC118948667
TU2702261 other downstream 6154 393590 ~ 414978 (+) True G2356447