RNA id: TCONS_00061522


Basic Information

Item Value
RNA id TCONS_00061522
length 624
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_030865
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10967799 ~ 10971601 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTAGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAAAGAGGAGAGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACTATAAATACATTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaacaaaatctgtaaaaataaaataaaattttcatcaTCT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061942 lncRNA downstream 21478 10936737 ~ 10946321 (-) False XLOC_030864
TCONS_00061943 lncRNA downstream 21478 10936737 ~ 10946321 (-) False XLOC_030864
TCONS_00061941 lncRNA downstream 21478 10936737 ~ 10946321 (-) False XLOC_030864
TCONS_00061940 lncRNA downstream 21559 10936737 ~ 10946240 (-) False XLOC_030864
TCONS_00061939 lncRNA downstream 467002 10497471 ~ 10500797 (-) False XLOC_030861
TCONS_00061524 lncRNA upstream 1556 10970237 ~ 10971601 (-) True XLOC_030865
TCONS_00061945 lncRNA upstream 68496 11037177 ~ 11038305 (-) True XLOC_030866
TCONS_00060019 lncRNA upstream 309745 11278426 ~ 11282892 (-) False XLOC_030868
TCONS_00060020 lncRNA upstream 309745 11278426 ~ 11283521 (-) True XLOC_030868
TCONS_00061946 lncRNA upstream 387956 11356637 ~ 11466086 (-) False XLOC_030869
TCONS_00060015 mRNA downstream 21420 10765611 ~ 10946379 (-) False XLOC_030864
TCONS_00060017 mRNA downstream 21567 10945753 ~ 10946232 (-) True XLOC_030864
TCONS_00060016 mRNA downstream 199541 10766547 ~ 10768258 (-) False XLOC_030864
TCONS_00060009 mRNA downstream 728720 10232193 ~ 10239079 (-) False XLOC_030860
TCONS_00060010 mRNA downstream 731200 10233011 ~ 10236599 (-) True XLOC_030860
TCONS_00060018 mRNA upstream 273610 11242291 ~ 11271209 (-) True XLOC_030867
TCONS_00060021 mRNA upstream 533897 11502578 ~ 11573490 (-) True XLOC_030870
TCONS_00060024 mRNA upstream 755747 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060023 mRNA upstream 755747 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060022 mRNA upstream 755747 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060014 other downstream 243134 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 458985 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 1761908 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00059992 other downstream 1780893 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059990 other downstream 1788363 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00060031 other upstream 1013683 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060039 other upstream 1224217 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060044 other upstream 1385040 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other upstream 1397528 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060054 other upstream 1755781 12724462 ~ 12725315 (-) True XLOC_030886

Expression Profile

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