RNA id: TCONS_00060020


Basic Information

Item Value
RNA id TCONS_00060020
length 2009
lncRNA type lincRNA
GC content 0.35
exon number 2
gene id XLOC_030868
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11278426 ~ 11283521 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTAGAATACGGGGCGGGACTTACAGGTTGCGTTCAATGTGTTCGGTTGGTTTTCAGCACTAGCAGtggatcattttttattttatgaacatTGTCAACATTAGAGTCTCGGGCTGATGTCTCTCCGCAAAACTCTAACGTTACCCAGATTTGGGTTCGCGGCTCGTGACCGAAGTTTTAGAAATTTGGTGACCTCCACTTGTCGCTATcatcaaaccaaaacaaacacacaagaggAGTCCGTTAACAGCAGTGAGCATGACTCCTTCAATAGCAAGATCTCCATCGACTTTGAACTGACCAGAGAAGCCTACAAGAGCAAAGACACTCTTGAGCTGCTGAGAAGCTTGGTCGTTTTCAAACTGTGCTCCTATGACATACTGGTCGATAAGAATAAAGAgATAATAGACCTCAGCAGGAAGCTCTTGGGCCAGAAAATGTTTGAGCAGTTTATGAAGATGACGTTCTACGGTCAGTTTGTGGCAGGCGAGGACCATCAGTCCATCAGGCCGGTCGTACAGAAGAACCAGGCGTATGGAGTGGGAGCTGTGCTGGATTACAGTGTAGAAGAGGATCTCTCACAGGAAGAGGCTGAAAGGAAAGAAATGGAGTAAGTTTTGATGTAAACAAGATCAAACGACCAGGTTTCAAATAATATTAACCCAAAAACtttaattctgtcattgtttattcGCTCTATACTTGTTCCAAGTCTAttagtgtttttcttttcttctgttgaacacaaaatatgatgTTTTGAAGAGTGCTGAAAACTTTTAACCATTAACTTCAATTATATTTGCAATTCTTTGCATGGATGCTGTTGCACActggtatttaaaaaatctaaatacatacatatttacatataaattatgtaaattatattagatttttttaggaGATTGTTGTTGAAGATTGTTGTTCTGCTAATTATTTCAAAGGGTTAACCTGttttgtctgttgaacacaaaaaaaatatatttcgaagaatgctgaaaacctgtaaccattgacttgcattttatttgcttttcttAGCATGGAAGTTGATGTTgtaaaaatgaggaaaaaagtTTACCTGGtcatttcaaacctgtttgagtttctctttcttctgttgaacacaagtagatattttgaggaatgctgaacACCTGTATCCATTGACCtcattttatttgcttttcctaGCATGGATTTTGTAATTGTAatcatttacaataaaacattaaattattaaattatttaaattatttcatctTGATAGTAGAATGTTGTTCAAGATGTTCAGTTGATtatcttaaaggcatagttcacctcaaaatgaaaaaaataaattaaattactcgTTTCgaacctgtttgattttctttcttctgttgaacacgcacactaaaaaagatatataaaaatatattggagacttgtaaccattcacttccatagtatttgtcttTCCTACTGAAGATGTTTacagtttttcagctttcttccaaaCATCTTCTTTTCAGAGATACTCTAAAGATTTTGAAGGACTCGATGGGAGAGTAAATTGTcttttttgggtgatctatccctttaattcgTTTTCTGGCATTTATTTGCAGAGCACACAAgccaaacttgactaattaatgggcaaataaataaatcagtgatcagtgtgtgagtGGAATATAAATGTGTGCAATTATTTTGTTCCATAGCACTTGATTAGCTTAATTTAAAGCAgcttgttaagtttttttttctttgttggtATTTActgttttccagttttttttttggggggggggggggcaatcattaaagtttatttttccatttaaaggggacctattaagCACACATCACCTTTATATGGGgtttaaacatttctgtggcagCAGTCTGTGAATATGACCAGCTTCTTTtagtaaaaatgtattgattttatttttttaaattacacttgataaaaacagaagcagaaacactttgattgacattctcctttttGTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194821

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061945 lncRNA downstream 240121 11037177 ~ 11038305 (-) True XLOC_030866
TCONS_00061524 lncRNA downstream 306825 10970237 ~ 10971601 (-) True XLOC_030865
TCONS_00061523 lncRNA downstream 307853 10967799 ~ 10970573 (-) False XLOC_030865
TCONS_00061944 lncRNA downstream 309729 10967839 ~ 10968697 (-) False XLOC_030865
TCONS_00061522 lncRNA downstream 309745 10967799 ~ 10968681 (-) False XLOC_030865
TCONS_00061946 lncRNA upstream 73116 11356637 ~ 11466086 (-) False XLOC_030869
TCONS_00061526 lncRNA upstream 73116 11356637 ~ 11466086 (-) False XLOC_030869
TCONS_00061525 lncRNA upstream 73116 11356637 ~ 11466128 (-) False XLOC_030869
TCONS_00061947 lncRNA upstream 120586 11404107 ~ 11466088 (-) False XLOC_030869
TCONS_00061948 lncRNA upstream 120586 11404107 ~ 11466153 (-) True XLOC_030869
TCONS_00060018 mRNA downstream 7217 11242291 ~ 11271209 (-) True XLOC_030867
TCONS_00060015 mRNA downstream 332047 10765611 ~ 10946379 (-) False XLOC_030864
TCONS_00060017 mRNA downstream 332194 10945753 ~ 10946232 (-) True XLOC_030864
TCONS_00060016 mRNA downstream 510168 10766547 ~ 10768258 (-) False XLOC_030864
TCONS_00060010 mRNA downstream 1041827 10233011 ~ 10236599 (-) True XLOC_030860
TCONS_00060021 mRNA upstream 219057 11502578 ~ 11573490 (-) True XLOC_030870
TCONS_00060024 mRNA upstream 440907 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060023 mRNA upstream 440907 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060022 mRNA upstream 440907 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060025 mRNA upstream 444312 11727833 ~ 11809404 (-) True XLOC_030872
TCONS_00060014 other downstream 553761 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 769612 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 2072535 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00059992 other downstream 2091520 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059990 other downstream 2098990 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00060031 other upstream 698843 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060039 other upstream 909377 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060044 other upstream 1070200 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other upstream 1082688 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060054 other upstream 1440941 12724462 ~ 12725315 (-) True XLOC_030886

Expression Profile

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