RNA id: TCONS_00061946


Basic Information

Item Value
RNA id TCONS_00061946
length 1871
lncRNA type read_through
GC content 0.41
exon number 7
gene id XLOC_030869
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11356637 ~ 11466153 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGACCTTTAACTGCAGCATCAGAAGCTCAGAGATCCACCAGAAGGGGAAGAAAAACATGTTGAAGTAGAGCATCATCTGTAGCGGGAGATGAGACGACACCTCCGCACACGCTAGACCACATCAGATTGTGTTTTGTTAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGATCGTTCTCTGCAGCCCTATGCAAGTCTCGAATGTCTAGATGACAGAAATCCCCCTTCAGTTTAAGTCTATGAGCTGAAATGGCTACCAGATGTGTATTCAGTGTGTTGCTGAACTCTACTGTGACGGAGCTCCAGGTCTGAAATGAGAGATGCCTTATATCCTCACCTTCATGGGGTACGCAGTAAACCGGCCCGTCTTCGCTGTTCTCGAAGGAAGAGAAAGATTCCTGGGATGACCATGACGGAGAAGGCTGGTCCACCACAGATGGAGGCTCGATGATACTGTTGAAGGTGTTTTCAGGATCGTGGTGGGTGACTAAGGGTTTGGACAAGGGGGAAACAAAACAGAGAGGTCAGGTCAAATCAGTGGAGGAATTTCTTTGGGTTTCTCTTTGCACAAAGTGCTCATTGACGACGTGTGATGATGTTTGGGCTCTACTGGAGTCCACTTTAGTGGCTGACTGGGGCAAATAGTGGAGCATGGAGAATCTGTATGAAAGCCAGCATTGACTGAGTGAAACATCAGACTTCAAAAGCTTGCTGGTATGGAATGATCTGCATGCCTCTGAAGACTTGGGAATTAGTTCTGGTGTGTACAGGTCAGGGTTAACACTGCTGTTTAAAGTTGGTTTGgtgctttttaaataacataGATGTGATCTGGTAAAATGAATGCACAGTCCCACCCAAATTTTATACCAACATAgacagttaataaaataatttttagttaaataaaatcagtacaaaatatcattacaaaacagttTTATGTAGGATATATTAACAACATATGTATAATATAAAGGTATATACAAATTAAAGATTGAATGTATTTTTCTTGTATAACACTGAAGCACATTTATACAGTTTGTTATATAATTCATAcagaatcatttatttatttatttatacagggacaatgtacaacatgacacgttgtgccagagttagctataaagctaatttacatctgtagtccctggaCAGGAAGTTGTAACaaatttgaattatatatatatatatatatatatatatatatatatggggcatTAGGagccacacagactgcaggttgagcgccccctgttggcctcacttACAATGTTACTTTCCTGTACAATGGAGATAATACTTTGAAGGTAAAGGAAAATATTCtgtgtgtttattcattcattcattttcttgtcggcttagtccctttattaattaaaccgccaacttatc

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0007276 gamete generation biological_process
GO:0007281 germ cell development biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0032504 multicellular organism reproduction biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060020 lncRNA downstream 73116 11278426 ~ 11283521 (-) True XLOC_030868
TCONS_00060019 lncRNA downstream 73745 11278426 ~ 11282892 (-) False XLOC_030868
TCONS_00061945 lncRNA downstream 318332 11037177 ~ 11038305 (-) True XLOC_030866
TCONS_00061524 lncRNA downstream 385036 10970237 ~ 10971601 (-) True XLOC_030865
TCONS_00061523 lncRNA downstream 386064 10967799 ~ 10970573 (-) False XLOC_030865
TCONS_00061949 lncRNA upstream 110587 11576673 ~ 11580017 (-) False XLOC_030871
TCONS_00061950 lncRNA upstream 110587 11576673 ~ 11603180 (-) False XLOC_030871
TCONS_00061951 lncRNA upstream 110587 11576673 ~ 11606710 (-) False XLOC_030871
TCONS_00061952 lncRNA upstream 110587 11576673 ~ 11663056 (-) False XLOC_030871
TCONS_00061953 lncRNA upstream 110587 11576673 ~ 11663228 (-) False XLOC_030871
TCONS_00060018 mRNA downstream 85428 11242291 ~ 11271209 (-) True XLOC_030867
TCONS_00060015 mRNA downstream 410258 10765611 ~ 10946379 (-) False XLOC_030864
TCONS_00060017 mRNA downstream 410405 10945753 ~ 10946232 (-) True XLOC_030864
TCONS_00060016 mRNA downstream 588379 10766547 ~ 10768258 (-) False XLOC_030864
TCONS_00060010 mRNA downstream 1120038 10233011 ~ 10236599 (-) True XLOC_030860
TCONS_00060021 mRNA upstream 36492 11502578 ~ 11573490 (-) True XLOC_030870
TCONS_00060024 mRNA upstream 258342 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060023 mRNA upstream 258342 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060022 mRNA upstream 258342 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060025 mRNA upstream 261747 11727833 ~ 11809404 (-) True XLOC_030872
TCONS_00060014 other downstream 631972 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 847823 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 2150746 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00059992 other downstream 2169731 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059990 other downstream 2177201 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00060031 other upstream 516278 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060039 other upstream 726812 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060044 other upstream 887635 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other upstream 900123 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060054 other upstream 1258376 12724462 ~ 12725315 (-) True XLOC_030886

Expression Profile

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