RNA id: TCONS_00061951


Basic Information

Item Value
RNA id TCONS_00061951
length 1771
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id XLOC_030871
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11576673 ~ 11663328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGATTCAGTGCATTGGCGGCCATCAGCCTATtatattgagcagagcaaagaaattgacgGTTGACGTTCCAcaacaagatggcgacagaaactGTATAAAGCTGAAAAATCATACAGCTGaagaaatcattataaaacaggggTAGACTTGGgagccctaagcaattccagTCCGCTGACATACATGGCGcactactggacaaactggtaacagcagaaaagtcgtccacacggagatgagttTCCATTCGAGAGATGCCAGAGGAGATGGAGTCTGTCCCTGCTCTGCGAAAAACACCACtcacatctgttttgtttaaGGGGGATCTGGGAATCATGGTTGCCTGTGGAGAAATGTATGCACTGaaatgaatgagagtgaatgaagGAGAGGAGTTTTTGTGTGCACATAGAATGCAGCATTGGGGGGCGTTCATAAACAATACTGTATATTCATTCGCTGCTGTTTCTCATTCATGACATGTTCCTGTCTGTGCATTCTTTGCTTGTTTATATCAGGGTCAGAAAATGTTAGAAATGCTTATACACACAAGATCCAAAAAATAATGGGTTATTCAAGGGAAAATACGAAACATTTGCAGCAGTCTTTATCAATAAGTCATTACATTTTTGGAGAAACAAACCTTTTATGTATAAGCTTGTATAAGCTGGTTTGCTTTGTGGCTTATGATGCTTCAAAGggtacctatgatgaaaatcatcttttggaagctgttaaGACAGAaccgtgtgtaggtatagtgtgtccacggtcatactggggtgataaagacaataagtcttaaatttcctgatgttaaaagtAGGATACAAATCCCTACGATTTTGGGGCCGACCACAGCGTGATGTACAATAGTACGTTGCTTTCTTATAAATTTTTACCCGAAATGTTAATTACATGCTGCTAATGAATTTTCACACGCAGTGTCAATTATACGCTGCTTTTTAAGGAGATTTCACACAGTGTCAATTATACGCTGCTTTTTAAGGAGATTTCACACAAAATGTCAATTATACGCTGCTTTGTTACGAATTTTCACGCTAAATGTCAATTATACGATGTCAATTTTACGCTGCTTTTTAAGGAGATTTCACACGAAATGTAAATTATATGCTGCTTTCTTACGACTTTTCACACAAAATGTCAATTATACGCTGCTTTTTATGGAGATTACACGTGAAATGTCAATTATATGCTGTTTTGTTAGAAATTTCACGCGAAATGTCAATTATACGGTGTCAATTTTACGCTGCTTTTTGAGGAGATTTCACCCGAAATGTAAATTATATGCTGTTTTCTTACAAATTTTCATGCACAATGTCAATTATATGCTGCTTTCTAAAGAATTGTCATGTGCAATGTCAATTATATGCTGCTTTATACATTTTACGCACTGTCAATTATACGCTGCTTTCTAAGGAATTGTCACGCACAATGTCAATTATACGCTGCATTCTTACGAATTTTCACACGCAATGTCAATTATATGCTGCCTTTTGAATTTTCATGCGCAATGTCAATTATACGTTGCTTTCTTGCGAATTTGACATGCAATGTCAATTATATGCTGCCTTATGAATTTTCATGCGCAATGTCAATTATATGCTGCTTTCTTACAATTTTTTTACGCACAATGTCAATTATATGCTGCTTTCTAAAGAATTATCACGTGCAGTGTCAATTATATGCTGCTTTATAAATTTTACGCACTGTCAGTTATACGCTGCTTTCTAAGGAATTGTCACAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061948 lncRNA downstream 110520 11404107 ~ 11466153 (-) True XLOC_030869
TCONS_00061525 lncRNA downstream 110545 11356637 ~ 11466128 (-) False XLOC_030869
TCONS_00061947 lncRNA downstream 110585 11404107 ~ 11466088 (-) False XLOC_030869
TCONS_00061946 lncRNA downstream 110587 11356637 ~ 11466086 (-) False XLOC_030869
TCONS_00060032 lncRNA upstream 404118 12010828 ~ 12018688 (-) False XLOC_030876
TCONS_00061955 lncRNA upstream 665427 12272137 ~ 12279939 (-) False XLOC_030879
TCONS_00060040 lncRNA upstream 665427 12272137 ~ 12280127 (-) False XLOC_030879
TCONS_00061527 lncRNA upstream 1228816 12835526 ~ 12836607 (-) True XLOC_030888
TCONS_00060062 lncRNA upstream 1524689 13131399 ~ 13167120 (-) True XLOC_030890
TCONS_00060021 mRNA downstream 3183 11502578 ~ 11573490 (-) True XLOC_030870
TCONS_00060018 mRNA downstream 305464 11242291 ~ 11271209 (-) True XLOC_030867
TCONS_00060015 mRNA downstream 630294 10765611 ~ 10946379 (-) False XLOC_030864
TCONS_00060024 mRNA upstream 117718 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060023 mRNA upstream 117718 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060022 mRNA upstream 117718 11724428 ~ 11809710 (-) False XLOC_030872
TCONS_00060025 mRNA upstream 121123 11727833 ~ 11809404 (-) True XLOC_030872
TCONS_00060026 mRNA upstream 257719 11864429 ~ 11905920 (-) True XLOC_030873
TCONS_00060014 other downstream 852008 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 1067859 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 2370782 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00059992 other downstream 2389767 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059990 other downstream 2397237 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00060031 other upstream 375654 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060039 other upstream 586188 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060044 other upstream 747011 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other upstream 759499 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060054 other upstream 1117752 12724462 ~ 12725315 (-) True XLOC_030886

Expression Profile

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