RNA id: TCONS_00060023


Basic Information

Item Value
RNA id TCONS_00060023
length 5787
RNA type mRNA
GC content 0.40
exon number 19
gene id XLOC_030872
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11724428 ~ 11809710 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTGTGAGCTTTCGAGTAACATTTGAGCTTTTTTggaaatttatttaaaagtttatttttttccatggtTGTATGTagtagtttataataataataataataataataataataataataataataataataataataataatactaataataataatgataataatacacaCAGGCTTTTAACAGTAACTGAATGACGTGCACTACTGCGCATGTCCTCCCGCCTCCTCGTGCACGCGCATGCGAAGgtGTTTAAACGAACGTGAATCGCACACACACCGCAGGAATTCAGCTGTGTTTACAGCTCCACAGGTGTAATGGCGGTGTGGAGGAAGTAAAGGGATAATGTATCCAGCTACTAGTTACCTTTTACCGCAGGTGGTTTTGTCGACGTCCTGCCATCAGGCATGCATTTGTCATCGCATTTTTGTTACTAGAGTGTAGCTTTTAAGCAGAGAGGTCATCTCTTTGTTTCTTCATAAGCTATGTTTCAGATAGACAGATAGTCAACAGGTTGTTTCTAAAGAGGAGAACCCATGAGCAGCTATTATGGCTAGTGCCCTTGCATCAAAAATGGGACTCTCTCTTCGGAGGAAGCAAGCCAAAATCTTCAATGTTACAGTTGTTACAATGGATGCTGATTTGGAGTTCAGCTGTGAGCTGAagtggcgaggaaaggatctgttTGAACTTGTATGCCGGACATTGGGGCTCAGGGAGACTTGGTTTTTTGGTCTGCGGTACGACGTCAAAGACACTGTGGCCTGGCTGAAAATGGACAAGAAGGTTTTGGATCATGATGTGCCCAAAGAGGAGCCTATAGTGTTTTATTTCCTGGCCAAGTTTTACCCTGAAAATGTAGAAGAAGAGTTGGTACAAGACATCACGCAGCACCTCTTCTTCCTCCAGGTGAAGAAGAGCATTTTAGAAGAGGAGATCTACTGTCCTCCCGAGGCTTCGGTGCTGTTAGCCTCTTACGCCGTCCATGCTAAGTATGGTGATTACAACCCTAATGTCCACAAGCCGGGCTTCCTGTCCCAAGACGAGCTGCTACCAAAGAGAGTTATTAATCTGTACCAGATGACTGCAGAGATGTGGGAGGAGAGAATAACGGTCTGCTACGCTGAGCACAGGGGCAGAACCAGAGATGAAGCAGAGATGGAGTATTTAAAAATAGCTCAGGATCTGGAGATGTATGGGGTCAATTACTTTTCCATTAGGAATAAAAAGGGAACCAGCCTTCTGCTTGGTGTTGACGCTTTGGGCCTCCACATTTATGACCTGGATAACAGACTGACGCCCAAAATCTCCTTTCCATGGAATGAGATCCGAAACATCTCCTACAGCGATAAAGAGtttgcaattAAACCTGTGGATAAGAGAGCAGATGTCTTCAAATTCAACTCTTCAAAGCTCAGAGTAAATAAactgATTCTCCAGCTGTGCATCGGGAACCATGATCTCTTCATGAGGAGACGCAGGGTTGATTCATTGGAGGTCCAGCAGATGAAGACTCAGGCTAGAGAAGAGAAAGCTCGCAAACAGATGGAGCGGCAGCGgctagagagagagaaacagttGCGTGAGGATGCAGAGAGAGCGCGTGATGAACTCCAGAGGAGACTCATTCAGTTACAGGACGAAGCTCACTTGGCCAATGAAGCACTGTTGCGTTCAGAGGAGACGGCAGATTTGTTGGCGGAAAAGGCACAAATCGCTGAGGAGGAGGCCAAGCTTTTGGCTCAGAAAGCGGCTGAGGCTGAACAGGAGATGCAGCGTATTAAGGTGACAGCCATTCGCTCTGAGGAGGAGAAGAGACTGATGGAGCAGAAGATGCTGGAGGCTGAGATGATTGCGCTCAAGATGGCAGAAGAGTCTGAAAGGAGGGCCAAAGAGGCCGACCAGCTGAAACAGGACCTGCAGGAGGCCAGAGAATCGGAGCGCAGAGCCAAAAACAAACTACTGGAGATCACCAGCAAAACGGAATATTCGCCTGTGCCGTTGTCTGCCAACTCTCTTCCTGCCGATGGTCCTAACTTCAACTTCAGCATGGAGAACCTGAGTTTTGACTTCAAAGACACAGACATGAAACGTCTGTCCATGGAGATCGAGAAGGAAAAGGTTGAGTACATGGAGAAGAGCAAACACCTTCAGGAGCAACTGAATGAACTGAAGACTGAGATTGAGTCATTAAAGCTAAAGGAGCGAGAAACGCCTCTAGACATCCTCCATAATGAGAACACGGAGAAAGGCACCAGCAAGCAGAGCAACTTTAAAAAGCTCACTCTACAGAGCACCAAATCCAGAGTGGCCTTCTTCCAGGAGCTTTAACCCTTCAGACACACTGGACTATAATGTCTGAATCGGGTGTCTCACTGTGTTTTTATCACACTGACGCATTCCTGTATTATCCAACTACATTCCGGTAATGAAGAAAAGAATATTTGGCGGTAAAATTTACATTACACTAAGAGGACCAGGACTTCTCATAAGCAGAACTACAGGGGCCACACTACACTTATACAAACTCAAACTATACACTGTTCCCCAGTATTTCTTTGTCTGCAGGAGGTAAAAACCccattataaacacagtatggTTATGCAGAGAACACACACTGACCACATATATCTCTGCAGTGCTTCTTAAAATTTGTCTCTCCAGTTGCGCTGCAGATTTCTGTCTCTCTCGATCAATATGTGTCAGAATAATTGGCTAAAGCAGTCATATTGCACCCTTGTGCCGTATTAGGTAGGGCATTTATTCTTTTGGTCTAATATGGACCTGTCTGGTCGTTCATAAAGGCTAAAATATACCTAATTGcgttacattttaaaagtttacttCTTTTCTCAGAGGATTGCTTAATACAGGATGTCTTGGGGAAGCAAAACCTTGCTATTTGGTAGGCCATTACATATGAACCATTTGgggcatttatttttttttaattgttgactttgcttgaaatgttttaaagtttgtgaatatattttttgaaaatgtgtttgtgcAGAGGATTAAATCAATGGAAATTAACTTAAATGTACTTTGCCTTTTTATTTTGGTGAACTTTGTCTAGGTTCACATTTTGCTATGAACGTCTGTACTGTATAGGTTTAAAATGTATGCTTTAGTTTGCAGCGATTCCAACACAGACATTGATTCCTCCTATTATTTTTCAGTTGtcaaattcagatttattttttttctgtagtggacaacaaaacaggcaaaaaaaaaaaaaaaaaaaaacttacattttggTCATAAGCATACTATAAAACCCAACTGCCCAGCAGTACTTTTCCCCTAATATTTCTGACCATACAATATATGAAacatacaatattaaaaatattgctcacattttattttagtgcTATAATTATTGCTATTAAAAACCATTaacacttagggctctattttaatgatctaggtgcaaggtctaaaacgcagggcgcaaaagcattaagggcgtgtccgaatcatacctgccaacattcggaTCCTGAAGTCCAGGAGATTTTATCCAGGGATGCGTgcaaagtgaagagcggggggaaGGTGCGCACAAACTGAAGAGCGGGGAGCAGATATGAAGATGGTTGCTTGTTGGGTTCGGTGCGCATATGGAccggactgtaccaaaaagctgaggagcgAGGGGGGGACTTCTGAGATTTTTCCGGAAGACAGAACAATATAGAAGATAGCCGgcagatgggtctgaaatacgggagactcctgggaaaaacgggagtgttggcaggtatggtgcgaatccacttttgctattataaggatggaaaaatacgctttgcATCGATccgcatggtctaacagagttgagcttatagtgagaaaacagttaaacagagcatctgcagcacgagaataaaggtgattaggttaacttaatagtttttacagtcGTTTTttgaagtgaattgaacataaaacaattaggtcaTCGCCCAAAAGAAACTTAAGAATAGtctttaaactaattttaaataagtagtttaaacatgtAGCAGTCATTTTTGAGTATTGATGTTTCATATAGTCTAGGTAATTGGTTACCATTTATTTGAAAGTCAAATCAAAAGCATATACgggcaaaataaaatgaatagccATTGCTTTAGATGACAGATTGAGCTTAAATGAATTGAAACCACCTGTGCAAGAAGTTGAAAATTTTTTCTCACATTATTACACTGAAATAGCTTTAACCTAGCAAATCAAGTCAGATTATTGTCTGGAGTTCTGTCAaacaattcacctttatttcatcagtttgttttggtaatcctGCAATGGCAAAACTTTATACAggtatgcactacctgacaatagtcctgtcgcctatccaagttttagaaacaacaaagaataatttgacttctagttgatcatttggtatcagaagtggcttatatgaaatgcaaaggcctctagatgacgcttattttaccaaaatatgatcatgtcttgattttgaattctttaattaggacagtaaagtctgactttgcttagacaaaagtcttgtcactcaacagaaataatgttcagtatagaatataaagtcagggcgcattgtaaaacaaattaatattgtgtatgactcccatgagcttggaggactgcatccatacatctctgcaatgactcaaatcacttattaataaagtcatctggaatggcaaagaaagcattttgCAGGAATCCCAGGGTTCATCAAGAtattttggattcatctttaatgcctcctccaccAGGTACTCCTGTGTGGAGTACCTGGActagctgaaaggacatccgctgcgtaaaatatgccggaatagttggcagttcattctgctgtggcggcccctgatcaataagggaataagctgaatgAATATGGGCTCATTTTGAATCAGGGACATCTGAAAGTAAGGTTTGAATAAGCGGTTCTGTTTAGTCAAATtggaatcaaaataaaaaatcattcgCAAACCAAACTCTGGATCATTTGCGGTAGTTTTGTATTAAAGCTAATCATTTTGTAAACCGTGTTTAGTCTCATACACATAGACAGATCATTTCCTAAGAGCTCgaagtagcagcagcagcagccctGGGTATAATTTTCCCTCACATGTATGTTTTGTTATGTTCGTTTCTTTGTTTTTATCTCAAATATCCAATAGCCACAGACTTTAAATTTTCCCCCAAGGATCATGGTTTAAGCTACAAAATGTTCTGCTGAAGAAAAAAGGTCACCTACATCCTGCATGGCCTGACAGCGAGTCATTTTTTATAGTAACTGTGCCTTCAGGTTTTTATCTGTTTAAAAAAGGGTACTGAAATCTGAATGGCTTCTGTGGTTGCATGTATCATTACTTTACAAATTCAGAGCACATAGTGACTCTTTCTTGAAAGGTTGTTTTATATCCAGTCCTCTTTGGAGAAAGTGAATGAGATTTTTATTCCCAGATGGAGCCCCGACTGTTAAGCTCCATTGTGTTTTGGGATGTTTTttagtgtgtgattgtgtttgtgtgggacAGGATTAGGACAGAACAGTTGGATTTTCCTCTTCCCGAAGAATGTTACGCAAGGTAAATCAACATAATCAGCCTATAAATTAACAATTCATATTTGTTGCAAGAAAGCTGCAACTATCTCATTTGTAGCATGAAGGATTAGTCACTAAATTACAATTCGCAATTAAATCATCAGTTTAATAGCTCATTAAAGCACTTTGTATGAAATAAACTGTGTTTACATCTG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-7 Predicted to enable actin binding activity. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Human ortholog(s) of this gene implicated in familial meningioma; neurilemmomatosis; and neurofibromatosis 2. Orthologous to human NF2 (neurofibromin 2).

Ensembl:

ensembl_id ENSDART00000181363

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061954 lncRNA downstream 61100 11576673 ~ 11663328 (-) True XLOC_030871
TCONS_00061953 lncRNA downstream 61200 11576673 ~ 11663228 (-) False XLOC_030871
TCONS_00061952 lncRNA downstream 61372 11576673 ~ 11663056 (-) False XLOC_030871
TCONS_00061951 lncRNA downstream 117718 11576673 ~ 11606710 (-) False XLOC_030871
TCONS_00061950 lncRNA downstream 121248 11576673 ~ 11603180 (-) False XLOC_030871
TCONS_00060032 lncRNA upstream 201118 12010828 ~ 12018688 (-) False XLOC_030876
TCONS_00061955 lncRNA upstream 462427 12272137 ~ 12279939 (-) False XLOC_030879
TCONS_00060040 lncRNA upstream 462427 12272137 ~ 12280127 (-) False XLOC_030879
TCONS_00061527 lncRNA upstream 1025816 12835526 ~ 12836607 (-) True XLOC_030888
TCONS_00060062 lncRNA upstream 1321689 13131399 ~ 13167120 (-) True XLOC_030890
TCONS_00060021 mRNA downstream 150938 11502578 ~ 11573490 (-) True XLOC_030870
TCONS_00060018 mRNA downstream 453219 11242291 ~ 11271209 (-) True XLOC_030867
TCONS_00060015 mRNA downstream 778049 10765611 ~ 10946379 (-) False XLOC_030864
TCONS_00060026 mRNA upstream 54719 11864429 ~ 11905920 (-) True XLOC_030873
TCONS_00060027 mRNA upstream 107218 11916928 ~ 11943750 (-) False XLOC_030874
TCONS_00060028 mRNA upstream 107865 11917575 ~ 11944398 (-) False XLOC_030874
TCONS_00060029 mRNA upstream 132452 11942162 ~ 11944361 (-) True XLOC_030874
TCONS_00060030 mRNA upstream 155403 11965113 ~ 11971946 (-) True XLOC_030875
TCONS_00060014 other downstream 999763 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 1215614 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 2518537 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00059992 other downstream 2537522 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059990 other downstream 2544992 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00060031 other upstream 172654 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060039 other upstream 383188 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060044 other upstream 544011 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other upstream 556499 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060054 other upstream 914752 12724462 ~ 12725315 (-) True XLOC_030886

Expression Profile

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