RNA id: TCONS_00060044


Basic Information

Item Value
RNA id TCONS_00060044
length 465
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_030879
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12100126 ~ 12525441 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAAGAGAATGCCTTACCTCCCATGGTGCTGAGTTTACAACGAGGCTGAAACAGTGTAGGACCCAAGGCAGAGCATGGACAGTGAGAGGGAGAGGAAATAGATATCAAGTCACAAATGTAACCCGGATCAGAACCATGAActgctttatatgttaaaatcaaCGTCTTAAAATCAATACGAGATTTGGCCGTTGTTGTATGAGATTGTGACTGTTGTTTGCAACAGTGAAGTAGACGGCGAAGCAAGACAAAGGACCACATTCCTGTGCCGTATCAACCGGACTCCAGCAGTAACCCATCGTCCACCACCTCCTCCACCCCGTCATCTCCTGCTCCTCCTCTGCCACCCAGCGCCACTCCTCCGTCTCCTCTCCATCCTTCACCACAGAGCGCCAGGCAGCAGAAACAGTCCAACCTGACAGCATCTCATTTCTACAAATACAAGCAGCAGTTCATCTTCCCCG

Function

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0006936 muscle contraction biological_process
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0045776 negative regulation of blood pressure biological_process
GO:0007263 nitric oxide mediated signal transduction biological_process
GO:0098924 retrograde trans-synaptic signaling by nitric oxide biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0006527 arginine catabolic process biological_process
GO:0009725 response to hormone biological_process
GO:0048668 collateral sprouting biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0010181 FMN binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko00220 Arginine biosynthesis
ko00330 Arginine and proline metabolism
ko04371 Apelin signaling pathway
ko04020 Calcium signaling pathway
ko04145 Phagosome
ko04926 Relaxin signaling pathway
ko04970 Salivary secretion
ko04730 Long-term depression
ko04713 Circadian entrainment
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05022 Pathways of neurodegeneration - multiple diseases
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-8047 Predicted to enable protein kinase activity. Predicted to be involved in Ras protein signal transduction and calcium-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human KSR2 (kinase suppressor of ras 2).

Ensembl:

ensembl_id ENSDART00000147300

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060040 lncRNA downstream 73594 12272137 ~ 12280127 (-) False XLOC_030879
TCONS_00061955 lncRNA downstream 73782 12272137 ~ 12279939 (-) False XLOC_030879
TCONS_00060032 lncRNA downstream 335033 12010828 ~ 12018688 (-) False XLOC_030876
TCONS_00061954 lncRNA downstream 690393 11576673 ~ 11663328 (-) True XLOC_030871
TCONS_00061953 lncRNA downstream 690493 11576673 ~ 11663228 (-) False XLOC_030871
TCONS_00061527 lncRNA upstream 462629 12835526 ~ 12836607 (-) True XLOC_030888
TCONS_00060062 lncRNA upstream 758502 13131399 ~ 13167120 (-) True XLOC_030890
TCONS_00061956 lncRNA upstream 904344 13277241 ~ 13306705 (-) True XLOC_030893
TCONS_00061528 lncRNA upstream 2148225 14521122 ~ 14522712 (-) True XLOC_030909
TCONS_00061957 lncRNA upstream 2407945 14780842 ~ 15176038 (-) False XLOC_030911
TCONS_00060038 mRNA downstream 81032 12100669 ~ 12272689 (-) False XLOC_030879
TCONS_00060037 mRNA downstream 130287 12100669 ~ 12223434 (-) False XLOC_030879
TCONS_00060036 mRNA downstream 134149 12100126 ~ 12219572 (-) False XLOC_030879
TCONS_00060035 mRNA downstream 260103 12065957 ~ 12093618 (-) True XLOC_030878
TCONS_00060034 mRNA downstream 290340 12032802 ~ 12063381 (-) True XLOC_030877
TCONS_00060046 mRNA upstream 130597 12503494 ~ 12524996 (-) True XLOC_030879
TCONS_00060047 mRNA upstream 176654 12549551 ~ 12560569 (-) True XLOC_030882
TCONS_00060048 mRNA upstream 189291 12562188 ~ 12587053 (-) True XLOC_030883
TCONS_00060049 mRNA upstream 264926 12637823 ~ 12687357 (-) False XLOC_030884
TCONS_00060050 mRNA upstream 264926 12637823 ~ 12701603 (-) True XLOC_030884
TCONS_00060039 other downstream 160707 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060031 other downstream 321800 11982364 ~ 12031921 (-) False XLOC_030876
TCONS_00060014 other downstream 1629056 10720894 ~ 10724665 (-) True XLOC_030863
TCONS_00060013 other downstream 1844907 10507826 ~ 10508814 (-) True XLOC_030862
TCONS_00059993 other downstream 3147830 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00060054 other upstream 351565 12724462 ~ 12725315 (-) True XLOC_030886
TCONS_00060061 other upstream 738038 13110935 ~ 13120593 (-) False XLOC_030890
TCONS_00060070 other upstream 1159977 13532874 ~ 13532988 (-) True XLOC_030896
TCONS_00060083 other upstream 1872252 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060087 other upstream 1995203 14368100 ~ 14372936 (-) True XLOC_030906

Expression Profile

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