RNA id: TCONS_00061989


Basic Information

Item Value
RNA id TCONS_00061989
length 1031
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_030995
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22230690 ~ 22235158 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTAGTGATCACACACATGCTGTCCgcctcacacaaacactcatcagCGCCTGATACATACGTGCCCCAGAGCGCACACCTCCCCACGGAACATTGAGTCAACACTTTAGGACTCCTGAAGCTCCAACCATCGAAGAACCAAGGAACCCAATGAACTGATCTCATCCAAgctaaaaagGTCCATCAGCACACCCCGTCTCTCTCCTCCTGATCTAGACTCTTCTCTTAGAGTATTTGACAGACTGTGGTTGACACTCGATCTAAAGGGGTGTCAGTTTGTCAAATACCCCAAGAGAGGGGGCACGAGTCTTCAGAATTCTGCAACACTTCGTATGACCCATGCGATCCTGTTACTCTCTCATGTTCAGCCTTTTTGTCTTGTGCAAAATGTGGAGGATGACAACATTCATTTATAATGTGCGCTTGAATTCATTACCTCTACATATATGCAATCTTTATGGTTGATTAGATACATAGAAATAAACAACAGTAAAGAGTACATTACCATTGTGCTGTCTGTGTCAGGGATAATTGTGTtaaaaaacattgtaaactaagacATAGTTCAGATAAGCAGTTTTTAGCATGTCGACCACAATGGCAGTTGCTGGGTGAGTGCCATTTGCTACCGAAAAAAAATAGAAGTTGTGAAATTTATGCGTTTGATTTGTCAACATGTGTTGCTCTGCATGTGggattgtgtgtttgtttcttttaattaaaTCTAATGAGGTCTGTTAAGCTTTAGTTATTCAATTCGCTGTACAAAGTTTGATTTATAAAACATTACATATTGAAATTCCTCTTTTAGAAAACGACACCTTATTAAGATAATTAGAAAAATTTCTTTCATTTCAGAAGAAATACCAGTGTTGGCAAGGTTATTAATGTTTTAGATTAGCTTAAGTTTACGATTTTTGTCTAATAAAGTCAATAAAATGTTGTTACTGAATCACCTTTTGGACTTTGGCACACAACAGATGCTGAATTcaaattaaatcacCTTTGGGACTTTGGCACACAACAGATG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0035265 organ growth biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0014855 striated muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0003407 neural retina development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055017 cardiac muscle tissue growth biological_process
GO:0060419 heart growth biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0031672 A band cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0030056 hemidesmosome cellular_component
GO:0030506 ankyrin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060220 lncRNA downstream 147883 22081595 ~ 22082807 (-) True XLOC_030992
TCONS_00060218 lncRNA downstream 185056 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060217 lncRNA downstream 188834 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00061988 lncRNA downstream 296412 21926822 ~ 21934278 (-) True XLOC_030987
TCONS_00061987 lncRNA downstream 297197 21926822 ~ 21933493 (-) False XLOC_030987
TCONS_00061991 lncRNA upstream 218778 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061992 lncRNA upstream 220514 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061530 lncRNA upstream 271393 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00060247 lncRNA upstream 721843 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 721843 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060222 mRNA downstream 99753 22115250 ~ 22130937 (-) True XLOC_030994
TCONS_00060219 mRNA downstream 147772 22073710 ~ 22082918 (-) False XLOC_030992
TCONS_00060216 mRNA downstream 177838 22027588 ~ 22052852 (-) False XLOC_030991
TCONS_00060215 mRNA downstream 203333 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060214 mRNA downstream 211629 22011575 ~ 22019061 (-) True XLOC_030989
TCONS_00060224 mRNA upstream 127963 22363015 ~ 22369916 (-) True XLOC_030996
TCONS_00060227 mRNA upstream 230034 22465086 ~ 22501663 (-) True XLOC_031000
TCONS_00060228 mRNA upstream 280295 22515347 ~ 22544151 (-) True XLOC_031002
TCONS_00060229 mRNA upstream 315562 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060230 mRNA upstream 315565 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060221 other downstream 133782 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 278556 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060206 other downstream 493345 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 937445 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060189 other downstream 1785017 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060225 other upstream 200734 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060226 other upstream 202259 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060254 other upstream 987649 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 1096101 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1468405 23703457 ~ 23714999 (-) True XLOC_031026

Expression Profile

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